CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7425 (NC_011884 5374575 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 205     Density of SSR      : 1SSR/ 26.22 kb   Average length of SSR  : 12.8 bp
Coding      : 185     Non-Coding           : 20   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 110 68 9 16 205
IMPERFECT 1 107 1353 1176 169 110 2916
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTA)41216931704Non coding
2. (CTG)41274967507Coding
3. (CAG)4122476524776Coding
4. (AGT)4126333363344Coding
5. (GGC)4128085380864Coding
6. (CAG)4129703797048Coding
7. (GAA)412102159102170Coding
8. (CGAA)312134858134869Coding
9. (TTCC)312150326150337Coding
10. (GGGCA)315163436163450Coding
11. (GCA)412166047166058Coding
12. (TCAG)312205604205615Coding
13. (ATCC)312208019208030Coding
14. (TGG)412272951272962Coding
15. (GGT)412290349290360Coding
16. (CGAT)312346077346088Coding
17. (GGC)412370377370388Coding
18. (CGG)515379889379903Coding
19. (TGT)412514858514869Coding
20. (GCG)412559303559314Coding
21. (TTTC)312596556596567Coding
22. (GTT)412624270624281Coding
23. (CAG)618664693664710Coding
24. (TTTC)312666215666226Non coding
25. (GTG)412685938685949Coding
26. (AATC)312686902686913Coding
27. (CCA)412716833716844Coding
28. (GCTCTG)318731910731927Coding
29. (GGT)412751772751783Coding
30. (CAAA)312807635807646Coding
31. (GGCATT)318831964831981Coding
32. (TACA)312842357842368Coding
33. (CCA)412888247888258Coding
34. (GATCAT)318906035906052Coding
35. (TCCC)312906378906389Coding
36. (CTG)412920823920834Coding
37. (CTG)412960332960343Coding
38. (GCTG)312974575974586Coding
39. (TGCC)312993560993571Coding
40. (GCG)41210572701057281Coding
41. (GGTTG)31510682221068236Coding
42. (TGG)41210977881097799Coding
43. (GCA)51511789201178934Coding
44. (CAC)41211789751178986Coding
45. (CGAT)31212007611200772Coding
46. (GCC)51512011451201159Coding
47. (GCC)41212071611207172Coding
48. (TG)61212230621223073Coding
49. (TGA)41212378051237816Coding
50. (CCAG)31212853811285392Coding
51. (ATGTCG)31813057291305746Coding
52. (CTATGA)31813113181311335Coding
53. (CCCA)31213402401340251Coding
54. (TCCA)31213661631366174Coding
55. (CCG)41213725161372527Coding
56. (GGA)41214003981400409Coding
57. (GCC)41214559211455932Coding
58. (GAGC)31215018651501876Coding
59. (AAT)41215202851520296Coding
60. (GGT)41215250441525055Coding
61. (CTG)41215533501553361Coding
62. (CTG)41215848821584893Coding
63. (TCA)41215878291587840Coding
64. (ATT)41216063961606407Non coding
65. (CCGC)31216234441623455Coding
66. (CTGG)31216506601650671Coding
67. (CCAGTC)31816614191661436Coding
68. (CATC)31216723341672345Coding
69. (GGC)51516884351688449Coding
70. (GGC)41216915951691606Coding
71. (CTTC)31217681101768121Coding
72. (CTGG)31217742211774232Coding
73. (TGG)41218081391808150Coding
74. (AGGG)31218085221808533Coding
75. (CCA)41218234961823507Coding
76. (TCC)41218871241887135Non coding
77. (AAAT)31219105051910516Coding
78. (CGC)41219644961964507Coding
79. (TGC)41219719771971988Coding
80. (GTTT)31220556672055678Coding
81. (GCC)41220976612097672Coding
82. (GATC)31221187072118718Coding
83. (TGG)41221295162129527Coding
84. (AGG)41221953892195400Coding
85. (GCA)41222129242212935Coding
86. (TTCAGA)63623087412308776Non coding
87. (CAG)41223163552316366Coding
88. (GCGG)31223717662371777Non coding
89. (TGG)41224503342450345Coding
90. (GGCA)31224920222492033Non coding
91. (CGG)41224934842493495Coding
92. (GGCTCC)31824996412499658Coding
93. (TCCG)31225391792539190Coding
94. (GGC)41225517572551768Coding
95. (GAGG)31225703382570349Non coding
96. (GATT)31225757092575720Coding
97. (GCC)41226121402612151Coding
98. (AAC)41226508562650867Coding
99. (CCCG)31226629802662991Coding
100. (ATCG)31226755712675582Coding
101. (GCC)41226793232679334Coding
102. (GGATT)31527644732764487Coding
103. (TTCC)31227672732767284Coding
104. (ATGG)31227711262771137Coding
105. (TGG)41227801732780184Coding
106. (GGTT)31227962442796255Coding
107. (CTG)41228109712810982Coding
108. (ACCC)31228138992813910Coding
109. (ACC)41228240432824054Coding
110. (TCT)41228552752855286Coding
111. (TGCT)31228713682871379Coding
112. (CGG)41228855472885558Coding
113. (CGAT)31228909492890960Coding
114. (CTG)41228968772896888Coding
115. (GATCAG)31829119682911985Coding
116. (GCCC)31229623062962317Coding
117. (GTGGCG)31829739302973947Coding
118. (TGG)41229776792977690Coding
119. (AGTC)31229826702982681Non coding
120. (TGC)41229971882997199Coding
121. (TCAA)31232043183204329Coding
122. (ACTAAA)31832373233237340Non coding
123. (TTAT)31232992333299244Non coding
124. (GCCGGA)31833252393325256Coding
125. (GGC)41233327053332716Coding
126. (CGC)41233607853360796Coding
127. (GCG)41233686493368660Coding
128. (CCG)41233822983382309Coding
129. (GCCCTG)31834407583440775Coding
130. (CAC)41234512233451234Coding
131. (GCC)41234777583477769Coding
132. (TGCC)31234980933498104Coding
133. (CCAT)31234987403498751Coding
134. (GCT)41235053243505335Coding
135. (TTTG)31235338173533828Coding
136. (ATCG)41635894743589489Coding
137. (CAG)41236032743603285Coding
138. (AATT)31236572303657241Non coding
139. (CAG)41237012753701286Coding
140. (GTG)41237048903704901Coding
141. (CCA)41238504503850461Coding
142. (GGC)41239101103910121Coding
143. (GGC)41239110203911031Coding
144. (CTG)41239491943949205Coding
145. (CCCCG)31539524123952426Coding
146. (C)121239563773956388Non coding
147. (CAGGGG)31839564053956422Non coding
148. (CAGA)31239730173973028Non coding
149. (ACA)41240085274008538Coding
150. (GCA)41240149024014913Coding
151. (CTG)41240414734041484Coding
152. (CCG)41240626374062648Coding
153. (CCAGC)31540632264063240Coding
154. (CCA)41240793174079328Coding
155. (GCC)41240874754087486Coding
156. (ACA)41241197834119794Non coding
157. (CTGC)31241519164151927Coding
158. (GTG)41241885264188537Coding
159. (ATCC)31242007044200715Non coding
160. (CCG)41242371844237195Coding
161. (AGC)41243300704330081Coding
162. (GGACT)31544048604404874Coding
163. (CCA)41244215404421551Coding
164. (CTTG)31244608644460875Coding
165. (CCAG)31244833544483365Coding
166. (ATCT)31244862144486225Coding
167. (TGG)41245549314554942Coding
168. (TGG)41246257354625746Coding
169. (CCA)41246298754629886Coding
170. (CAG)41246345044634515Coding
171. (CAG)41246465794646590Coding
172. (TCAGG)31546742624674276Coding
173. (GCTG)31246934254693436Coding
174. (TGGA)31247562254756236Coding
175. (AACT)31247735834773594Non coding
176. (CAA)41247852924785303Coding
177. (TGG)41248079974808008Coding
178. (CCTGAG)31848245104824527Coding
179. (CCGA)31248280684828079Coding
180. (GGCT)31248602494860260Coding
181. (CCCA)31249075534907564Coding
182. (GGT)41249354214935432Coding
183. (GGT)41249484964948507Coding
184. (GCCCT)31549489844948998Coding
185. (GTG)41249724424972453Coding
186. (GGCA)31249897194989730Coding
187. (CAG)41250213115021322Coding
188. (CAAT)31250269015026912Coding
189. (GATC)31250586715058682Coding
190. (GAC)41250802595080270Coding
191. (GCTG)31250946835094694Coding
192. (AGG)41251075855107596Coding
193. (CTG)41251189345118945Coding
194. (GGC)41251375385137549Coding
195. (GGC)41251394535139464Coding
196. (CCAGG)31551724335172447Coding
197. (CCG)41251827475182758Coding
198. (CAC)41251878765187887Coding
199. (AACCAG)31851911165191133Coding
200. (GGAC)31252405245240535Coding
201. (CTG)41252518455251856Coding
202. (TTCC)31252745655274576Coding
203. (CAGC)31253266985326709Non coding
204. (CCA)41253521785352189Coding
205. (CTG)41253652115365222Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.