CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7425 (NC_011884 5374575 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 205     Density of SSR      : 1SSR/ 26.22 kb   Average length of SSR  : 12.8 bp
Coding      : 185     Non-Coding           : 20   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 110 68 9 16 205
IMPERFECT 1 107 1353 1176 169 110 2916
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTA)41216931704Non coding
2. (CTG)41274967507Coding
3. (CAG)4122476524776Coding
4. (AGT)4126333363344Coding
5. (GGC)4128085380864Coding
6. (CAG)4129703797048Coding
7. (GAA)412102159102170Coding
8. (GCA)412166047166058Coding
9. (TGG)412272951272962Coding
10. (GGT)412290349290360Coding
11. (GGC)412370377370388Coding
12. (CGG)515379889379903Coding
13. (TGT)412514858514869Coding
14. (GCG)412559303559314Coding
15. (GTT)412624270624281Coding
16. (CAG)618664693664710Coding
17. (GTG)412685938685949Coding
18. (CCA)412716833716844Coding
19. (GGT)412751772751783Coding
20. (CCA)412888247888258Coding
21. (CTG)412920823920834Coding
22. (CTG)412960332960343Coding
23. (GCG)41210572701057281Coding
24. (TGG)41210977881097799Coding
25. (GCA)51511789201178934Coding
26. (CAC)41211789751178986Coding
27. (GCC)51512011451201159Coding
28. (GCC)41212071611207172Coding
29. (TGA)41212378051237816Coding
30. (CCG)41213725161372527Coding
31. (GGA)41214003981400409Coding
32. (GCC)41214559211455932Coding
33. (AAT)41215202851520296Coding
34. (GGT)41215250441525055Coding
35. (CTG)41215533501553361Coding
36. (CTG)41215848821584893Coding
37. (TCA)41215878291587840Coding
38. (ATT)41216063961606407Non coding
39. (GGC)51516884351688449Coding
40. (GGC)41216915951691606Coding
41. (TGG)41218081391808150Coding
42. (CCA)41218234961823507Coding
43. (TCC)41218871241887135Non coding
44. (CGC)41219644961964507Coding
45. (TGC)41219719771971988Coding
46. (GCC)41220976612097672Coding
47. (TGG)41221295162129527Coding
48. (AGG)41221953892195400Coding
49. (GCA)41222129242212935Coding
50. (CAG)41223163552316366Coding
51. (TGG)41224503342450345Coding
52. (CGG)41224934842493495Coding
53. (GGC)41225517572551768Coding
54. (GCC)41226121402612151Coding
55. (AAC)41226508562650867Coding
56. (GCC)41226793232679334Coding
57. (TGG)41227801732780184Coding
58. (CTG)41228109712810982Coding
59. (ACC)41228240432824054Coding
60. (TCT)41228552752855286Coding
61. (CGG)41228855472885558Coding
62. (CTG)41228968772896888Coding
63. (TGG)41229776792977690Coding
64. (TGC)41229971882997199Coding
65. (GGC)41233327053332716Coding
66. (CGC)41233607853360796Coding
67. (GCG)41233686493368660Coding
68. (CCG)41233822983382309Coding
69. (CAC)41234512233451234Coding
70. (GCC)41234777583477769Coding
71. (GCT)41235053243505335Coding
72. (CAG)41236032743603285Coding
73. (CAG)41237012753701286Coding
74. (GTG)41237048903704901Coding
75. (CCA)41238504503850461Coding
76. (GGC)41239101103910121Coding
77. (GGC)41239110203911031Coding
78. (CTG)41239491943949205Coding
79. (ACA)41240085274008538Coding
80. (GCA)41240149024014913Coding
81. (CTG)41240414734041484Coding
82. (CCG)41240626374062648Coding
83. (CCA)41240793174079328Coding
84. (GCC)41240874754087486Coding
85. (ACA)41241197834119794Non coding
86. (GTG)41241885264188537Coding
87. (CCG)41242371844237195Coding
88. (AGC)41243300704330081Coding
89. (CCA)41244215404421551Coding
90. (TGG)41245549314554942Coding
91. (TGG)41246257354625746Coding
92. (CCA)41246298754629886Coding
93. (CAG)41246345044634515Coding
94. (CAG)41246465794646590Coding
95. (CAA)41247852924785303Coding
96. (TGG)41248079974808008Coding
97. (GGT)41249354214935432Coding
98. (GGT)41249484964948507Coding
99. (GTG)41249724424972453Coding
100. (CAG)41250213115021322Coding
101. (GAC)41250802595080270Coding
102. (AGG)41251075855107596Coding
103. (CTG)41251189345118945Coding
104. (GGC)41251375385137549Coding
105. (GGC)41251394535139464Coding
106. (CCG)41251827475182758Coding
107. (CAC)41251878765187887Coding
108. (CTG)41252518455251856Coding
109. (CCA)41253521785352189Coding
110. (CTG)41253652115365222Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.