CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7425 (NC_011884 5374575 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 205     Density of SSR      : 1SSR/ 26.22 kb   Average length of SSR  : 12.8 bp
Coding      : 185     Non-Coding           : 20   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 110 68 9 16 205
IMPERFECT 1 107 1353 1176 169 110 2916
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGAA)312134858134869Coding
2. (TTCC)312150326150337Coding
3. (TCAG)312205604205615Coding
4. (ATCC)312208019208030Coding
5. (CGAT)312346077346088Coding
6. (TTTC)312596556596567Coding
7. (TTTC)312666215666226Non coding
8. (AATC)312686902686913Coding
9. (CAAA)312807635807646Coding
10. (TACA)312842357842368Coding
11. (TCCC)312906378906389Coding
12. (GCTG)312974575974586Coding
13. (TGCC)312993560993571Coding
14. (CGAT)31212007611200772Coding
15. (CCAG)31212853811285392Coding
16. (CCCA)31213402401340251Coding
17. (TCCA)31213661631366174Coding
18. (GAGC)31215018651501876Coding
19. (CCGC)31216234441623455Coding
20. (CTGG)31216506601650671Coding
21. (CATC)31216723341672345Coding
22. (CTTC)31217681101768121Coding
23. (CTGG)31217742211774232Coding
24. (AGGG)31218085221808533Coding
25. (AAAT)31219105051910516Coding
26. (GTTT)31220556672055678Coding
27. (GATC)31221187072118718Coding
28. (GCGG)31223717662371777Non coding
29. (GGCA)31224920222492033Non coding
30. (TCCG)31225391792539190Coding
31. (GAGG)31225703382570349Non coding
32. (GATT)31225757092575720Coding
33. (CCCG)31226629802662991Coding
34. (ATCG)31226755712675582Coding
35. (TTCC)31227672732767284Coding
36. (ATGG)31227711262771137Coding
37. (GGTT)31227962442796255Coding
38. (ACCC)31228138992813910Coding
39. (TGCT)31228713682871379Coding
40. (CGAT)31228909492890960Coding
41. (GCCC)31229623062962317Coding
42. (AGTC)31229826702982681Non coding
43. (TCAA)31232043183204329Coding
44. (TTAT)31232992333299244Non coding
45. (TGCC)31234980933498104Coding
46. (CCAT)31234987403498751Coding
47. (TTTG)31235338173533828Coding
48. (ATCG)41635894743589489Coding
49. (AATT)31236572303657241Non coding
50. (CAGA)31239730173973028Non coding
51. (CTGC)31241519164151927Coding
52. (ATCC)31242007044200715Non coding
53. (CTTG)31244608644460875Coding
54. (CCAG)31244833544483365Coding
55. (ATCT)31244862144486225Coding
56. (GCTG)31246934254693436Coding
57. (TGGA)31247562254756236Coding
58. (AACT)31247735834773594Non coding
59. (CCGA)31248280684828079Coding
60. (GGCT)31248602494860260Coding
61. (CCCA)31249075534907564Coding
62. (GGCA)31249897194989730Coding
63. (CAAT)31250269015026912Coding
64. (GATC)31250586715058682Coding
65. (GCTG)31250946835094694Coding
66. (GGAC)31252405245240535Coding
67. (TTCC)31252745655274576Coding
68. (CAGC)31253266985326709Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.