CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7822 (NC_014501 6091621 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 298     Density of SSR      : 1SSR/ 20.44 kb   Average length of SSR  : 12.75 bp
Coding      : 242     Non-Coding           : 50   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 184 84 11 18 298
IMPERFECT 8 171 2068 1635 168 152 4202
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATACTT)318194593194610Coding
2. (GGGAAG)318767533767550Non coding
3. (GGCACA)31810743681074385Non coding
4. (AAGAAA)31818511161851133Non coding
5. (GATCAA)31820262692026286Coding
6. (GGGAAA)31820394712039488Non coding
7. (CTGTTG)31820814222081439Coding
8. (GTTGCC)42422397672239790Coding
9. (CCCTCT)31824854362485453Non coding
10. (AGGTTC)31828054962805513Coding
11. (GGATTA)31828926502892667Coding
12. (GGGGTT)42435393173539340Coding
13. (TTGGGG)31835393633539380Coding
14. (TTCTTT)31835450683545085Coding
15. (AGGACA)31839091763909193Coding
16. (AATCAA)31842000754200092Coding
17. (GGCAAA)31845390684539085Non coding
18. (GATGAA)31856658515665868Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.