CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7822 (NC_014501 6091621 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 298     Density of SSR      : 1SSR/ 20.44 kb   Average length of SSR  : 12.75 bp
Coding      : 242     Non-Coding           : 50   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 184 84 11 18 298
IMPERFECT 8 171 2068 1635 168 152 4202
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAAA)31243784389Coding
2. (CCA)4124640146412Coding
3. (TACT)312132413132424Non coding
4. (CGG)515145972145986Coding
5. (ATC)515169277169291Coding
6. (TTAT)312178078178089Coding
7. (ATACTT)318194593194610Coding
8. (GCG)412219664219675Coding
9. (CTTT)312229244229255Non coding
10. (TAA)412258987258998Coding
11. (AAG)412261172261183Coding
12. (CGG)412272960272971Coding
13. (AATT)312321923321934Coding
14. (TCA)412328270328281Coding-Non coding
15. (GTAG)312353222353233Non coding
16. (TAT)412355024355035Coding
17. (AATA)312369487369498Coding
18. (TCC)412400726400737Coding
19. (TTC)412404467404478Coding
20. (AATC)312410540410551Coding
21. (ATT)412413348413359Coding
22. (TAA)515424455424469Coding
23. (TTC)412434629434640Coding
24. (TTA)412438833438844Non coding
25. (AAG)412452267452278Coding
26. (AAT)412563531563542Coding
27. (AAT)412563873563884Coding
28. (TTAT)312601224601235Coding
29. (GGCG)312707693707704Coding
30. (TAA)412714422714433Coding
31. (GCC)515732094732108Coding
32. (GAT)412754492754503Coding
33. (GGGAAG)318767533767550Non coding
34. (CGG)412788294788305Coding
35. (CTT)412790158790169Coding
36. (TTAAC)315822964822978Non coding
37. (GAT)515838936838950Coding
38. (CTT)412851583851594Coding
39. (CAA)412868447868458Coding
40. (AACC)312878940878951Coding
41. (GAT)412911753911764Coding
42. (GGT)412913861913872Coding
43. (AAAG)312917421917432Coding
44. (TAT)412961128961139Coding
45. (ATT)515961297961311Coding
46. (ATT)412975713975724Coding
47. (TTA)412989210989221Coding
48. (AATC)312996757996768Coding-Non coding
49. (TCTTT)31510245751024589Coding
50. (AGG)41210637531063764Coding
51. (GGCGA)31510650671065081Coding
52. (GGCACA)31810743681074385Non coding
53. (TATT)31210952821095293Coding
54. (ATT)41211059381105949Coding
55. (CAA)41211113111111322Coding
56. (TTG)41211302331130244Coding
57. (AATA)31211402111140222Coding-Non coding
58. (AACT)31211411441141155Non coding
59. (CAAA)31211522501152261Coding
60. (CAAT)31211528951152906Coding
61. (ATT)41211583271158338Non coding
62. (AAC)41211759911176002Coding
63. (TTAA)31211762401176251Non coding
64. (TTA)51511779911178005Coding
65. (GGT)41212355331235544Coding
66. (TTAT)31212578921257903Coding
67. (GGC)41213138011313812Coding
68. (GAA)41213278501327861Coding
69. (AAG)41213355991335610Coding
70. (TAG)41213658951365906Coding
71. (TCG)41213790701379081Coding
72. (AGA)41213808551380866Coding
73. (TAA)41213880061388017Coding
74. (CCG)41214055491405560Coding
75. (GCA)41214243431424354Coding
76. (ATG)41214487741448785Coding
77. (CGG)41214552041455215Coding
78. (ACA)41214798701479881Coding
79. (AAAT)31214949961495007Coding
80. (CAG)41215256361525647Coding
81. (CCG)41215521651552176Coding
82. (CCG)41215551271555138Coding
83. (CAA)41215601571560168Coding
84. (AACA)31216336991633710Coding
85. (TAT)41216613231661334Non coding
86. (ATC)41217264671726478Coding
87. (GGC)41217903091790320Coding
88. (CTG)41218085891808600Coding
89. (GCA)41218104531810464Coding
90. (ATG)41218184601818471Coding
91. (AAGAAA)31818511161851133Non coding
92. (TAT)41218627121862723Coding
93. (TCA)41219045741904585Coding
94. (CTG)51519146061914620Coding
95. (GGA)41219543751954386Coding
96. (TTG)41219981441998155Coding
97. (ATT)41220010672001078Coding
98. (TAT)41220115202011531Coding
99. (GATCAA)31820262692026286Coding
100. (TTCT)31220287652028776Coding
101. (GGGAAA)31820394712039488Non coding
102. (AATT)31220434562043467Non coding
103. (TTAT)31220522412052252Coding
104. (TTTG)31220641862064197Coding
105. (CTGTTG)31820814222081439Coding
106. (AAT)41220981632098174Coding
107. (TAA)41221219092121920Coding
108. (TAA)61821614162161433Coding
109. (CAT)41222125162212527Coding
110. (CCG)41222320972232108Coding
111. (GTTGCC)42422397672239790Coding
112. (GTT)41223034952303506Coding
113. (CGG)41223080632308074Coding
114. (CGG)41223181492318160Coding
115. (AACT)31223674172367428Coding
116. (ACG)61823799272379944Coding
117. (CAA)41223859092385920Coding
118. (GTC)41223921522392163Coding
119. (ATCC)31224279382427949Non coding
120. (TCC)41224439952444006Coding
121. (AAT)41224476842447695Coding
122. (GAA)41224707962470807Coding
123. (CCCTCT)31824854362485453Non coding
124. (AAT)41224930872493098Coding
125. (CTTA)31225055422505553Non coding
126. (CAT)41225304182530429Coding
127. (GAT)41225459342545945Coding
128. (TTGA)31225724542572465Coding
129. (AAT)41225755602575571Coding
130. (TTC)41226001012600112Coding
131. (CTT)41226229802622991Coding
132. (GAA)41226283812628392Coding
133. (TCT)41226466522646663Coding
134. (AGTT)31226475482647559Coding-Non coding
135. (TCAG)31226737222673733Coding
136. (ATTG)31226933652693376Non coding
137. (GAGG)31227044512704462Coding
138. (CCA)41227094342709445Coding
139. (CATC)31227658842765895Coding
140. (CGG)41227920842792095Coding
141. (AGT)41227997612799772Coding
142. (AGGTTC)31828054962805513Coding
143. (CAA)41228322052832216Coding
144. (AAGA)31228882102888221Non coding
145. (AGCA)31228887552888766Coding
146. (AATT)31228902812890292Coding
147. (GGATTA)31828926502892667Coding
148. (AATC)31229113002911311Coding
149. (CGC)41229127932912804Coding
150. (CCG)41229343752934386Coding
151. (CCG)41229641562964167Coding
152. (TTG)41229708972970908Coding
153. (TTA)41229864972986508Coding
154. (AATT)31230250043025015Coding
155. (CAAA)31230271993027210Non coding
156. (CAT)41230478063047817Coding
157. (TGG)41230631623063173Coding
158. (TAATT)31530665493066563Non coding
159. (CGC)41230733333073344Coding
160. (AAC)41231000423100053Coding
161. (AAT)41231054293105440Coding
162. (TC)61231414843141495Coding
163. (TTTA)31231657603165771Coding
164. (TCT)41231707503170761Coding
165. (TGT)41231820703182081Non coding
166. (CGC)41231914433191454Coding
167. (TCT)41232282503228261Coding
168. (TTC)41232509023250913Coding
169. (AAG)41232620583262069Coding
170. (CGG)41232735233273534Coding
171. (TCA)41232785553278566Coding
172. (TAAA)31232928753292886Non coding
173. (TGA)41233066543306665Coding-Non coding
174. (ATC)41233169523316963Coding
175. (CCG)41233244313324442Coding
176. (TTAA)31233600933360104Non coding
177. (ACAAA)31533922703392284Coding
178. (GAA)41234592583459269Coding
179. (TCC)41234754713475482Coding
180. (ACA)41235127893512800Coding
181. (GGGGTT)42435393173539340Coding
182. (TTGGGG)31835393633539380Coding
183. (CTC)41235426373542648Coding
184. (TTCTTT)31835450683545085Coding
185. (GCAG)31235541273554138Non coding
186. (CAA)41236077743607785Coding
187. (CGG)41236296933629704Coding
188. (ATTG)31236311853631196Coding
189. (TAAA)31236467393646750Coding
190. (CTC)41237436453743656Coding
191. (CGG)41237492103749221Coding
192. (GCT)41237622173762228Coding
193. (ATAA)31237640173764028Non coding
194. (ATG)41237739663773977Coding
195. (TAT)41238195673819578Non coding
196. (GCCA)31238285483828559Coding
197. (AATA)31238524913852502Coding
198. (TTG)41238533373853348Coding
199. (ATTT)31238606183860629Non coding
200. (CTT)41238730593873070Coding
201. (AGGACA)31839091763909193Coding
202. (CGC)41239341123934123Coding
203. (GCC)41239514463951457Coding
204. (TTG)41241024364102447Coding
205. (TTAA)31241115624111573Coding-Non coding
206. (TTAT)31241214324121443Non coding
207. (TATT)31241818914181902Coding
208. (ATT)41241924044192415Coding
209. (AATCAA)31842000754200092Coding
210. (ATG)41242287154228726Coding
211. (ATAA)31242384204238431Coding
212. (AATT)31242613164261327Coding
213. (AAT)41243279534327964Coding
214. (GGT)61843704014370418Coding
215. (TTAA)41644090074409022Non coding
216. (TTA)51544207614420775Coding
217. (GCC)41244596574459668Coding
218. (CTAT)31244646324464643Non coding
219. (GAT)41244713564471367Coding
220. (AAT)41244838904483901Non coding
221. (CTT)41244913914491402Coding
222. (CAAA)31244972634497274Coding
223. (TTTA)31245075794507590Coding
224. (TGT)41245270254527036Non coding
225. (CTTAT)31545379464537960Non coding
226. (GGCAAA)31845390684539085Non coding
227. (TAAAA)31545492324549246Non coding
228. (AATA)31245568584556869Coding
229. (ATAA)31245621534562164Coding
230. (CGC)41245672284567239Coding
231. (ATC)41245862534586264Coding
232. (AATA)31246404084640419Non coding
233. (GCC)41246713534671364Coding
234. (GAT)41247027774702788Coding
235. (TATT)31247418584741869Non coding
236. (TGTGA)31547494674749481Non coding
237. (GAA)41247895074789518Coding
238. (CAAT)31248211504821161Coding
239. (AAT)41248560854856096Non coding
240. (AAGT)31248563304856341Non coding
241. (TGT)41248739054873916Coding
242. (TAAA)31248922824892293Coding
243. (AATT)31248979494897960Non coding
244. (CCG)41249063674906378Coding
245. (TTGGG)31549305134930527Non coding
246. (TCT)41249375444937555Coding
247. (CGC)41249588974958908Coding
248. (CCG)41249692564969267Coding
249. (GGC)51549777014977715Coding
250. (TAA)41250814255081436Coding
251. (AGAA)31251273275127338Coding
252. (AAT)41251319875131998Non coding
253. (GAT)41251353125135323Coding
254. (ATAA)31251629645162975Coding
255. (ATTT)31252038385203849Non coding
256. (TATT)31252434925243503Coding
257. (AAAT)31252437925243803Coding
258. (AAC)41252677695267780Coding
259. (AAATT)31552937315293745Coding
260. (CGG)41253396305339641Coding
261. (AAAT)31253410335341044Non coding
262. (ATTT)31253574375357448Coding
263. (TCA)92753592145359240Coding
264. (TTC)41253604795360490Coding
265. (TAT)41253804295380440Coding
266. (CTT)41254076605407671Coding
267. (TTG)51554183015418315Coding
268. (TTGTC)31554479545447968Coding
269. (CCG)41254559185455929Coding
270. (TTTA)31254663105466321Coding
271. (CGG)41254891075489118Coding
272. (CGC)41255261705526181Non coding
273. (GGTC)31255331565533167Coding
274. (TCA)41255604585560469Coding
275. (AAAT)31255959795595990Coding
276. (AGTT)31256100205610031Coding
277. (CAA)41256150555615066Coding
278. (AATA)31256416005641611Coding
279. (CTC)41256566875656698Coding
280. (GATGAA)31856658515665868Coding
281. (GAA)41257186685718679Coding
282. (AGTC)31257210975721108Coding
283. (AGA)41257503495750360Coding
284. (ATT)41257566735756684Coding
285. (CTT)41257838755783886Coding
286. (GGC)41257877125787723Coding
287. (AAT)41257933805793391Coding
288. (AAC)41257959905796001Non coding
289. (AAAT)31258307695830780Non coding
290. (AAAC)31258309285830939Non coding
291. (TTTA)31258355485835559Coding
292. (TCA)41259061515906162Coding
293. (GAG)41259609655960976Coding
294. (GAC)41260111196011130Coding
295. (ATG)41260266436026654Coding
296. (TCT)41260422646042275Coding
297. (ACC)41260504496050460Coding
298. (ATT)41260555876055598Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.