CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7822 (NC_014501 6091621 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 298     Density of SSR      : 1SSR/ 20.44 kb   Average length of SSR  : 12.75 bp
Coding      : 242     Non-Coding           : 50   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 184 84 11 18 298
IMPERFECT 8 171 2068 1635 168 152 4202
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCA)4124640146412Coding
2. (CGG)515145972145986Coding
3. (ATC)515169277169291Coding
4. (GCG)412219664219675Coding
5. (TAA)412258987258998Coding
6. (AAG)412261172261183Coding
7. (CGG)412272960272971Coding
8. (TCA)412328270328281Coding-Non coding
9. (TAT)412355024355035Coding
10. (TCC)412400726400737Coding
11. (TTC)412404467404478Coding
12. (ATT)412413348413359Coding
13. (TAA)515424455424469Coding
14. (TTC)412434629434640Coding
15. (TTA)412438833438844Non coding
16. (AAG)412452267452278Coding
17. (AAT)412563531563542Coding
18. (AAT)412563873563884Coding
19. (TAA)412714422714433Coding
20. (GCC)515732094732108Coding
21. (GAT)412754492754503Coding
22. (CGG)412788294788305Coding
23. (CTT)412790158790169Coding
24. (GAT)515838936838950Coding
25. (CTT)412851583851594Coding
26. (CAA)412868447868458Coding
27. (GAT)412911753911764Coding
28. (GGT)412913861913872Coding
29. (TAT)412961128961139Coding
30. (ATT)515961297961311Coding
31. (ATT)412975713975724Coding
32. (TTA)412989210989221Coding
33. (AGG)41210637531063764Coding
34. (ATT)41211059381105949Coding
35. (CAA)41211113111111322Coding
36. (TTG)41211302331130244Coding
37. (ATT)41211583271158338Non coding
38. (AAC)41211759911176002Coding
39. (TTA)51511779911178005Coding
40. (GGT)41212355331235544Coding
41. (GGC)41213138011313812Coding
42. (GAA)41213278501327861Coding
43. (AAG)41213355991335610Coding
44. (TAG)41213658951365906Coding
45. (TCG)41213790701379081Coding
46. (AGA)41213808551380866Coding
47. (TAA)41213880061388017Coding
48. (CCG)41214055491405560Coding
49. (GCA)41214243431424354Coding
50. (ATG)41214487741448785Coding
51. (CGG)41214552041455215Coding
52. (ACA)41214798701479881Coding
53. (CAG)41215256361525647Coding
54. (CCG)41215521651552176Coding
55. (CCG)41215551271555138Coding
56. (CAA)41215601571560168Coding
57. (TAT)41216613231661334Non coding
58. (ATC)41217264671726478Coding
59. (GGC)41217903091790320Coding
60. (CTG)41218085891808600Coding
61. (GCA)41218104531810464Coding
62. (ATG)41218184601818471Coding
63. (TAT)41218627121862723Coding
64. (TCA)41219045741904585Coding
65. (CTG)51519146061914620Coding
66. (GGA)41219543751954386Coding
67. (TTG)41219981441998155Coding
68. (ATT)41220010672001078Coding
69. (TAT)41220115202011531Coding
70. (AAT)41220981632098174Coding
71. (TAA)41221219092121920Coding
72. (TAA)61821614162161433Coding
73. (CAT)41222125162212527Coding
74. (CCG)41222320972232108Coding
75. (GTT)41223034952303506Coding
76. (CGG)41223080632308074Coding
77. (CGG)41223181492318160Coding
78. (ACG)61823799272379944Coding
79. (CAA)41223859092385920Coding
80. (GTC)41223921522392163Coding
81. (TCC)41224439952444006Coding
82. (AAT)41224476842447695Coding
83. (GAA)41224707962470807Coding
84. (AAT)41224930872493098Coding
85. (CAT)41225304182530429Coding
86. (GAT)41225459342545945Coding
87. (AAT)41225755602575571Coding
88. (TTC)41226001012600112Coding
89. (CTT)41226229802622991Coding
90. (GAA)41226283812628392Coding
91. (TCT)41226466522646663Coding
92. (CCA)41227094342709445Coding
93. (CGG)41227920842792095Coding
94. (AGT)41227997612799772Coding
95. (CAA)41228322052832216Coding
96. (CGC)41229127932912804Coding
97. (CCG)41229343752934386Coding
98. (CCG)41229641562964167Coding
99. (TTG)41229708972970908Coding
100. (TTA)41229864972986508Coding
101. (CAT)41230478063047817Coding
102. (TGG)41230631623063173Coding
103. (CGC)41230733333073344Coding
104. (AAC)41231000423100053Coding
105. (AAT)41231054293105440Coding
106. (TCT)41231707503170761Coding
107. (TGT)41231820703182081Non coding
108. (CGC)41231914433191454Coding
109. (TCT)41232282503228261Coding
110. (TTC)41232509023250913Coding
111. (AAG)41232620583262069Coding
112. (CGG)41232735233273534Coding
113. (TCA)41232785553278566Coding
114. (TGA)41233066543306665Coding-Non coding
115. (ATC)41233169523316963Coding
116. (CCG)41233244313324442Coding
117. (GAA)41234592583459269Coding
118. (TCC)41234754713475482Coding
119. (ACA)41235127893512800Coding
120. (CTC)41235426373542648Coding
121. (CAA)41236077743607785Coding
122. (CGG)41236296933629704Coding
123. (CTC)41237436453743656Coding
124. (CGG)41237492103749221Coding
125. (GCT)41237622173762228Coding
126. (ATG)41237739663773977Coding
127. (TAT)41238195673819578Non coding
128. (TTG)41238533373853348Coding
129. (CTT)41238730593873070Coding
130. (CGC)41239341123934123Coding
131. (GCC)41239514463951457Coding
132. (TTG)41241024364102447Coding
133. (ATT)41241924044192415Coding
134. (ATG)41242287154228726Coding
135. (AAT)41243279534327964Coding
136. (GGT)61843704014370418Coding
137. (TTA)51544207614420775Coding
138. (GCC)41244596574459668Coding
139. (GAT)41244713564471367Coding
140. (AAT)41244838904483901Non coding
141. (CTT)41244913914491402Coding
142. (TGT)41245270254527036Non coding
143. (CGC)41245672284567239Coding
144. (ATC)41245862534586264Coding
145. (GCC)41246713534671364Coding
146. (GAT)41247027774702788Coding
147. (GAA)41247895074789518Coding
148. (AAT)41248560854856096Non coding
149. (TGT)41248739054873916Coding
150. (CCG)41249063674906378Coding
151. (TCT)41249375444937555Coding
152. (CGC)41249588974958908Coding
153. (CCG)41249692564969267Coding
154. (GGC)51549777014977715Coding
155. (TAA)41250814255081436Coding
156. (AAT)41251319875131998Non coding
157. (GAT)41251353125135323Coding
158. (AAC)41252677695267780Coding
159. (CGG)41253396305339641Coding
160. (TCA)92753592145359240Coding
161. (TTC)41253604795360490Coding
162. (TAT)41253804295380440Coding
163. (CTT)41254076605407671Coding
164. (TTG)51554183015418315Coding
165. (CCG)41254559185455929Coding
166. (CGG)41254891075489118Coding
167. (CGC)41255261705526181Non coding
168. (TCA)41255604585560469Coding
169. (CAA)41256150555615066Coding
170. (CTC)41256566875656698Coding
171. (GAA)41257186685718679Coding
172. (AGA)41257503495750360Coding
173. (ATT)41257566735756684Coding
174. (CTT)41257838755783886Coding
175. (GGC)41257877125787723Coding
176. (AAT)41257933805793391Coding
177. (AAC)41257959905796001Non coding
178. (TCA)41259061515906162Coding
179. (GAG)41259609655960976Coding
180. (GAC)41260111196011130Coding
181. (ATG)41260266436026654Coding
182. (TCT)41260422646042275Coding
183. (ACC)41260504496050460Coding
184. (ATT)41260555876055598Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.