CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7822 (NC_014501 6091621 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 298     Density of SSR      : 1SSR/ 20.44 kb   Average length of SSR  : 12.75 bp
Coding      : 242     Non-Coding           : 50   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 184 84 11 18 298
IMPERFECT 8 171 2068 1635 168 152 4202
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAAA)31243784389Coding
2. (TACT)312132413132424Non coding
3. (TTAT)312178078178089Coding
4. (CTTT)312229244229255Non coding
5. (AATT)312321923321934Coding
6. (GTAG)312353222353233Non coding
7. (AATA)312369487369498Coding
8. (AATC)312410540410551Coding
9. (TTAT)312601224601235Coding
10. (GGCG)312707693707704Coding
11. (AACC)312878940878951Coding
12. (AAAG)312917421917432Coding
13. (AATC)312996757996768Coding-Non coding
14. (TATT)31210952821095293Coding
15. (AATA)31211402111140222Coding-Non coding
16. (AACT)31211411441141155Non coding
17. (CAAA)31211522501152261Coding
18. (CAAT)31211528951152906Coding
19. (TTAA)31211762401176251Non coding
20. (TTAT)31212578921257903Coding
21. (AAAT)31214949961495007Coding
22. (AACA)31216336991633710Coding
23. (TTCT)31220287652028776Coding
24. (AATT)31220434562043467Non coding
25. (TTAT)31220522412052252Coding
26. (TTTG)31220641862064197Coding
27. (AACT)31223674172367428Coding
28. (ATCC)31224279382427949Non coding
29. (CTTA)31225055422505553Non coding
30. (TTGA)31225724542572465Coding
31. (AGTT)31226475482647559Coding-Non coding
32. (TCAG)31226737222673733Coding
33. (ATTG)31226933652693376Non coding
34. (GAGG)31227044512704462Coding
35. (CATC)31227658842765895Coding
36. (AAGA)31228882102888221Non coding
37. (AGCA)31228887552888766Coding
38. (AATT)31228902812890292Coding
39. (AATC)31229113002911311Coding
40. (AATT)31230250043025015Coding
41. (CAAA)31230271993027210Non coding
42. (TTTA)31231657603165771Coding
43. (TAAA)31232928753292886Non coding
44. (TTAA)31233600933360104Non coding
45. (GCAG)31235541273554138Non coding
46. (ATTG)31236311853631196Coding
47. (TAAA)31236467393646750Coding
48. (ATAA)31237640173764028Non coding
49. (GCCA)31238285483828559Coding
50. (AATA)31238524913852502Coding
51. (ATTT)31238606183860629Non coding
52. (TTAA)31241115624111573Coding-Non coding
53. (TTAT)31241214324121443Non coding
54. (TATT)31241818914181902Coding
55. (ATAA)31242384204238431Coding
56. (AATT)31242613164261327Coding
57. (TTAA)41644090074409022Non coding
58. (CTAT)31244646324464643Non coding
59. (CAAA)31244972634497274Coding
60. (TTTA)31245075794507590Coding
61. (AATA)31245568584556869Coding
62. (ATAA)31245621534562164Coding
63. (AATA)31246404084640419Non coding
64. (TATT)31247418584741869Non coding
65. (CAAT)31248211504821161Coding
66. (AAGT)31248563304856341Non coding
67. (TAAA)31248922824892293Coding
68. (AATT)31248979494897960Non coding
69. (AGAA)31251273275127338Coding
70. (ATAA)31251629645162975Coding
71. (ATTT)31252038385203849Non coding
72. (TATT)31252434925243503Coding
73. (AAAT)31252437925243803Coding
74. (AAAT)31253410335341044Non coding
75. (ATTT)31253574375357448Coding
76. (TTTA)31254663105466321Coding
77. (GGTC)31255331565533167Coding
78. (AAAT)31255959795595990Coding
79. (AGTT)31256100205610031Coding
80. (AATA)31256416005641611Coding
81. (AGTC)31257210975721108Coding
82. (AAAT)31258307695830780Non coding
83. (AAAC)31258309285830939Non coding
84. (TTTA)31258355485835559Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.