CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Cyanothece sp. PCC 8801 (NC_011726 4679414 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 239     Density of SSR      : 1SSR/ 19.5 kb   Average length of SSR  : 13.12 bp
Coding      : 193     Non-Coding           : 41   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 133 70 17 19 239
IMPERFECT 1 79 1705 1272 153 114 3324
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CATGGT)318107157107174Coding
2. (TATTAA)318241701241718Coding
3. (AGGGTG)318367824367841Coding-Non coding
4. (TGGTGC)318440021440038Coding
5. (ATGAGG)318503287503304Coding
6. (GGGATA)31810002851000302Coding
7. (ACGCCT)31811040371104054Coding
8. (ACCCAA)31815563541556371Coding
9. (CTGCTA)31820338962033913Coding
10. (AAAGGC)31822417752241792Coding
11. (AATCAG)31824160852416102Coding
12. (CCAAAG)31826809572680974Coding
13. (AATCCT)31827836312783648Coding
14. (AATCCT)53027836552783684Coding
15. (CAGAAG)31838017383801755Non coding
16. (TATCTT)31838512693851286Coding
17. (TTTAGG)31844667844466801Coding
18. (GTAGGA)31844763264476343Coding
19. (CCTTCC)31844976844497701Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.