CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8801 (NC_011726 4679414 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 239     Density of SSR      : 1SSR/ 19.5 kb   Average length of SSR  : 13.12 bp
Coding      : 193     Non-Coding           : 41   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 133 70 17 19 239
IMPERFECT 1 79 1705 1272 153 114 3324
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)41286678678Coding
2. (TGTT)3123419134202Non coding
3. (ATTT)3129469294703Coding
4. (CATGGT)318107157107174Coding
5. (TTA)412136772136783Coding
6. (TCTT)312151149151160Non coding
7. (ACA)412151385151396Coding
8. (CAAC)312160869160880Non coding
9. (CTTT)312182036182047Coding
10. (CAA)412189486189497Coding
11. (TCT)515196638196652Coding
12. (TATTAA)318241701241718Coding
13. (AATT)312277067277078Coding
14. (ATTT)312300838300849Coding
15. (ATTG)312327175327186Non coding
16. (TCCTA)315329256329270Non coding
17. (ATT)412363773363784Coding
18. (AGGGTG)318367824367841Coding-Non coding
19. (TATT)312403800403811Non coding
20. (ATTTT)315435731435745Non coding
21. (TGGTGC)318440021440038Coding
22. (TGA)412443178443189Coding
23. (ATG)412469570469581Non coding
24. (AAAT)312497632497643Coding-Non coding
25. (ATGAGG)318503287503304Coding
26. (GATT)312541536541547Non coding
27. (TCA)412568078568089Coding
28. (TGA)412613758613769Coding
29. (GAA)412627670627681Coding
30. (AAT)412644297644308Coding
31. (TTC)412678687678698Coding
32. (TTAT)312680102680113Non coding
33. (CCA)412711073711084Coding
34. (TGCCA)315714770714784Coding
35. (AATT)312728539728550Coding
36. (TTG)412732766732777Coding
37. (ATCAA)315738055738069Non coding
38. (TGGT)312747232747243Non coding
39. (TAA)412773117773128Coding
40. (GGT)412785879785890Coding
41. (ATTT)312788031788042Non coding
42. (AACTT)315788127788141Non coding
43. (TTA)412829112829123Coding
44. (GAG)412831502831513Coding
45. (ATA)412863877863888Coding
46. (ACTA)312864160864171Non coding
47. (ATT)412904898904909Coding
48. (TTA)412911033911044Coding
49. (TCG)515912747912761Non coding
50. (TCAA)312931592931603Coding-Non coding
51. (ATTT)312937374937385Coding
52. (AAT)412953183953194Coding
53. (AAT)412957594957605Coding
54. (AAG)412974627974638Coding
55. (GGGATA)31810002851000302Coding
56. (AGAT)31210213931021404Coding
57. (TGC)41210340321034043Coding
58. (TGC)41210340621034073Coding
59. (GCA)41210757761075787Coding
60. (CAG)51510796011079615Coding
61. (TGT)41210819541081965Coding
62. (ACGCCT)31811040371104054Coding
63. (TGC)41211047191104730Coding
64. (CGT)61811188281118845Coding
65. (TCG)61811193221119339Coding
66. (AGG)41212382991238310Coding
67. (TTA)41212485751248586Coding-Non coding
68. (GCA)41212747871274798Coding
69. (ATT)41212939851293996Coding
70. (AAT)41212958961295907Non coding
71. (TTCA)31213022721302283Non coding
72. (CTGT)31213155851315596Coding
73. (CGC)41213389081338919Coding
74. (TCTG)31213565501356561Coding
75. (CCA)41214698121469823Coding
76. (TAAAA)31514961091496123Coding
77. (CTT)51515025171502531Coding
78. (GCA)41215160821516093Coding
79. (ATT)41215250991525110Coding
80. (TCGA)31215306171530628Coding
81. (ACCCAA)31815563541556371Coding
82. (TGG)41215664681566479Coding
83. (TTC)41215670101567021Coding
84. (TTG)41216234581623469Coding
85. (ATT)41216455811645592Non coding
86. (TTTAT)31517013651701379Coding
87. (AAT)41217448601744871Coding
88. (AGG)41217682631768274Coding
89. (TATT)31217772821777293Non coding
90. (GCT)41217987961798807Coding
91. (TGA)41218192031819214Coding
92. (CAT)41218229871822998Coding
93. (TCA)61818329361832953Coding
94. (CTT)41218369781836989Coding
95. (CCT)41218750401875051Non coding
96. (CAACT)31519048511904865Non coding
97. (TTTA)31219124591912470Coding
98. (TTAA)31219507901950801Non coding
99. (GTC)41219806311980642Coding
100. (TAAAG)31519877811987795Coding
101. (CTGCTA)31820338962033913Coding
102. (AGC)61820433052043322Coding
103. (AAG)41220817132081724Coding
104. (ACA)41220868822086893Coding
105. (TTTG)31220972892097300Coding
106. (AAT)41221163322116343Coding
107. (GGC)41221416992141710Coding
108. (TAAA)31221530902153101Non coding
109. (CCCA)31221618692161880Coding
110. (CAC)41221623962162407Coding
111. (GGT)41221949332194944Coding
112. (ATA)41221994402199451Coding
113. (CAAT)31222069912207002Coding
114. (CCG)41222345202234531Coding
115. (AGA)41222380172238028Coding
116. (AAAGGC)31822417752241792Coding
117. (CTTC)31222444102244421Coding
118. (ATT)41222680602268071Coding
119. (TGTTT)31522685892268603Coding
120. (GTG)51522713382271352Coding
121. (TCG)41223176402317651Coding
122. (TGGT)31223788492378860Coding
123. (CCA)41223944702394481Coding
124. (GAGGA)31524081492408163Coding
125. (AATCAG)31824160852416102Coding
126. (GAGT)31224537152453726Coding
127. (AATT)31224710292471040Coding
128. (ATG)41224934072493418Coding
129. (ATT)41225109382510949Non coding
130. (GAA)41225327662532777Coding
131. (GAA)41225553452555356Coding
132. (GCC)51526041292604143Coding
133. (TTAT)31226145552614566Coding-Non coding
134. (TAA)41226687492668760Coding
135. (CCAAAG)31826809572680974Coding
136. (ATCC)31227047392704750Coding
137. (TCC)41227055012705512Coding
138. (AAAT)31227280072728018Coding
139. (CAA)41227308002730811Non coding
140. (AATC)31227829192782930Non coding
141. (AATCCT)31827836312783648Coding
142. (AATCCT)53027836552783684Coding
143. (CTC)41227837702783781Coding
144. (CTT)51528011012801115Coding
145. (TATC)31228153042815315Non coding
146. (ATG)41228294142829425Coding
147. (ATTA)31228481232848134Non coding
148. (TAA)41228484582848469Coding
149. (TGTGA)31528706902870704Non coding
150. (AATA)31228912812891292Coding
151. (AATAA)31528915992891613Coding
152. (TATTT)31529150252915039Coding
153. (TAA)41229338372933848Coding
154. (TCT)41229731402973151Coding
155. (AAT)41229919552991966Coding
156. (TCG)41230233803023391Coding
157. (TCT)41230810723081083Coding
158. (TGC)41231080873108098Coding
159. (GTT)41231621673162178Coding
160. (AGA)41231703813170392Coding
161. (AGA)41231750723175083Coding
162. (ATT)41231807413180752Coding
163. (GTC)41231964563196467Coding
164. (GCT)41232172983217309Coding
165. (ATC)41232332553233266Coding
166. (GATT)31232540693254080Coding
167. (TGT)41232725923272603Coding
168. (GAC)41233524333352444Coding
169. (AAT)41233823753382386Coding
170. (GAA)41234241113424122Coding
171. (ATG)41234735173473528Coding
172. (TTA)41235189263518937Coding
173. (GGTT)31235247053524716Non coding
174. (AAG)41235446853544696Coding
175. (AATA)31235495883549599Non coding
176. (AAAT)31235611063561117Coding
177. (TCCAT)31535813053581319Coding
178. (GGT)41235897153589726Coding
179. (AGC)41236422033642214Coding
180. (AAG)41236578043657815Coding
181. (TTAA)31236625003662511Non coding
182. (CAT)41236684413668452Coding
183. (CCAT)31236751133675124Coding
184. (TAA)41236774503677461Coding
185. (CCAT)31237749043774915Coding
186. (ATT)41237840473784058Coding
187. (CAGAAG)31838017383801755Non coding
188. (ACTC)31238224333822444Non coding
189. (TTA)41238392373839248Non coding
190. (TATCTT)31838512693851286Coding
191. (CTA)41238893693889380Non coding
192. (CTC)41239175213917532Coding
193. (AAAG)31239208353920846Non coding
194. (TGA)41239357053935716Coding
195. (TAAA)31239384443938455Coding
196. (AGC)41239443743944385Coding
197. (AAAG)31239569503956961Coding
198. (TAA)41239751193975130Coding
199. (ATCA)31240082874008298Coding
200. (ATTT)31240083024008313Coding
201. (TGA)41240196334019644Coding
202. (AATT)31240409904041001Coding
203. (GTC)41240475564047567Coding
204. (ATT)41240864614086472Coding
205. (TAAA)31240866464086657Coding
206. (TTTC)31240900764090087Coding
207. (CAA)41241185494118560Coding
208. (TCAA)31241291764129187Coding
209. (GCT)41241535154153526Coding
210. (GCA)41241558594155870Coding
211. (AAG)41241946424194653Coding
212. (TGGT)31242175794217590Coding
213. (TTTG)31242311224231133Coding
214. (TAAA)31242620654262076Coding
215. (CAAT)31242630384263049Coding-Non coding
216. (AGAA)31242793654279376Coding
217. (CCAA)31242833654283376Coding
218. (TCG)41242912834291294Coding
219. (AAG)41242958614295872Coding
220. (TTA)41242971324297143Coding
221. (CTT)41243374644337475Coding
222. (TAAGT)31544167264416740Non coding
223. (TGC)41244535764453587Coding
224. (GTTT)31244557984455809Coding
225. (CTC)41244558474455858Coding
226. (TTTAGG)31844667844466801Coding
227. (TCT)41244717064471717Coding
228. (GTAGGA)31844763264476343Coding
229. (CCTTCC)31844976844497701Non coding
230. (CCAA)31245099714509982Coding
231. (AAT)41245799444579955Coding
232. (ATC)72145851174585137Coding
233. (AATG)31246057774605788Coding
234. (AAAC)31246173924617403Coding
235. (CAG)41246198744619885Coding
236. (GAA)41246272944627305Coding
237. (ATTGA)31546590054659019Coding
238. (TACT)31246596574659668Coding
239. (TTAT)31246673124667323Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.