CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8801 (NC_011726 4679414 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 239     Density of SSR      : 1SSR/ 19.5 kb   Average length of SSR  : 13.12 bp
Coding      : 193     Non-Coding           : 41   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 133 70 17 19 239
IMPERFECT 1 79 1705 1272 153 114 3324
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCCTA)315329256329270Non coding
2. (ATTTT)315435731435745Non coding
3. (TGCCA)315714770714784Coding
4. (ATCAA)315738055738069Non coding
5. (AACTT)315788127788141Non coding
6. (TAAAA)31514961091496123Coding
7. (TTTAT)31517013651701379Coding
8. (CAACT)31519048511904865Non coding
9. (TAAAG)31519877811987795Coding
10. (TGTTT)31522685892268603Coding
11. (GAGGA)31524081492408163Coding
12. (TGTGA)31528706902870704Non coding
13. (AATAA)31528915992891613Coding
14. (TATTT)31529150252915039Coding
15. (TCCAT)31535813053581319Coding
16. (TAAGT)31544167264416740Non coding
17. (ATTGA)31546590054659019Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.