CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8801 (NC_011726 4679414 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 239     Density of SSR      : 1SSR/ 19.5 kb   Average length of SSR  : 13.12 bp
Coding      : 193     Non-Coding           : 41   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 133 70 17 19 239
IMPERFECT 1 79 1705 1272 153 114 3324
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)41286678678Coding
2. (TTA)412136772136783Coding
3. (ACA)412151385151396Coding
4. (CAA)412189486189497Coding
5. (TCT)515196638196652Coding
6. (ATT)412363773363784Coding
7. (TGA)412443178443189Coding
8. (ATG)412469570469581Non coding
9. (TCA)412568078568089Coding
10. (TGA)412613758613769Coding
11. (GAA)412627670627681Coding
12. (AAT)412644297644308Coding
13. (TTC)412678687678698Coding
14. (CCA)412711073711084Coding
15. (TTG)412732766732777Coding
16. (TAA)412773117773128Coding
17. (GGT)412785879785890Coding
18. (TTA)412829112829123Coding
19. (GAG)412831502831513Coding
20. (ATA)412863877863888Coding
21. (ATT)412904898904909Coding
22. (TTA)412911033911044Coding
23. (TCG)515912747912761Non coding
24. (AAT)412953183953194Coding
25. (AAT)412957594957605Coding
26. (AAG)412974627974638Coding
27. (TGC)41210340321034043Coding
28. (TGC)41210340621034073Coding
29. (GCA)41210757761075787Coding
30. (CAG)51510796011079615Coding
31. (TGT)41210819541081965Coding
32. (TGC)41211047191104730Coding
33. (CGT)61811188281118845Coding
34. (TCG)61811193221119339Coding
35. (AGG)41212382991238310Coding
36. (TTA)41212485751248586Coding-Non coding
37. (GCA)41212747871274798Coding
38. (ATT)41212939851293996Coding
39. (AAT)41212958961295907Non coding
40. (CGC)41213389081338919Coding
41. (CCA)41214698121469823Coding
42. (CTT)51515025171502531Coding
43. (GCA)41215160821516093Coding
44. (ATT)41215250991525110Coding
45. (TGG)41215664681566479Coding
46. (TTC)41215670101567021Coding
47. (TTG)41216234581623469Coding
48. (ATT)41216455811645592Non coding
49. (AAT)41217448601744871Coding
50. (AGG)41217682631768274Coding
51. (GCT)41217987961798807Coding
52. (TGA)41218192031819214Coding
53. (CAT)41218229871822998Coding
54. (TCA)61818329361832953Coding
55. (CTT)41218369781836989Coding
56. (CCT)41218750401875051Non coding
57. (GTC)41219806311980642Coding
58. (AGC)61820433052043322Coding
59. (AAG)41220817132081724Coding
60. (ACA)41220868822086893Coding
61. (AAT)41221163322116343Coding
62. (GGC)41221416992141710Coding
63. (CAC)41221623962162407Coding
64. (GGT)41221949332194944Coding
65. (ATA)41221994402199451Coding
66. (CCG)41222345202234531Coding
67. (AGA)41222380172238028Coding
68. (ATT)41222680602268071Coding
69. (GTG)51522713382271352Coding
70. (TCG)41223176402317651Coding
71. (CCA)41223944702394481Coding
72. (ATG)41224934072493418Coding
73. (ATT)41225109382510949Non coding
74. (GAA)41225327662532777Coding
75. (GAA)41225553452555356Coding
76. (GCC)51526041292604143Coding
77. (TAA)41226687492668760Coding
78. (TCC)41227055012705512Coding
79. (CAA)41227308002730811Non coding
80. (CTC)41227837702783781Coding
81. (CTT)51528011012801115Coding
82. (ATG)41228294142829425Coding
83. (TAA)41228484582848469Coding
84. (TAA)41229338372933848Coding
85. (TCT)41229731402973151Coding
86. (AAT)41229919552991966Coding
87. (TCG)41230233803023391Coding
88. (TCT)41230810723081083Coding
89. (TGC)41231080873108098Coding
90. (GTT)41231621673162178Coding
91. (AGA)41231703813170392Coding
92. (AGA)41231750723175083Coding
93. (ATT)41231807413180752Coding
94. (GTC)41231964563196467Coding
95. (GCT)41232172983217309Coding
96. (ATC)41232332553233266Coding
97. (TGT)41232725923272603Coding
98. (GAC)41233524333352444Coding
99. (AAT)41233823753382386Coding
100. (GAA)41234241113424122Coding
101. (ATG)41234735173473528Coding
102. (TTA)41235189263518937Coding
103. (AAG)41235446853544696Coding
104. (GGT)41235897153589726Coding
105. (AGC)41236422033642214Coding
106. (AAG)41236578043657815Coding
107. (CAT)41236684413668452Coding
108. (TAA)41236774503677461Coding
109. (ATT)41237840473784058Coding
110. (TTA)41238392373839248Non coding
111. (CTA)41238893693889380Non coding
112. (CTC)41239175213917532Coding
113. (TGA)41239357053935716Coding
114. (AGC)41239443743944385Coding
115. (TAA)41239751193975130Coding
116. (TGA)41240196334019644Coding
117. (GTC)41240475564047567Coding
118. (ATT)41240864614086472Coding
119. (CAA)41241185494118560Coding
120. (GCT)41241535154153526Coding
121. (GCA)41241558594155870Coding
122. (AAG)41241946424194653Coding
123. (TCG)41242912834291294Coding
124. (AAG)41242958614295872Coding
125. (TTA)41242971324297143Coding
126. (CTT)41243374644337475Coding
127. (TGC)41244535764453587Coding
128. (CTC)41244558474455858Coding
129. (TCT)41244717064471717Coding
130. (AAT)41245799444579955Coding
131. (ATC)72145851174585137Coding
132. (CAG)41246198744619885Coding
133. (GAA)41246272944627305Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.