CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8801 (NC_011726 4679414 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 239     Density of SSR      : 1SSR/ 19.5 kb   Average length of SSR  : 13.12 bp
Coding      : 193     Non-Coding           : 41   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 133 70 17 19 239
IMPERFECT 1 79 1705 1272 153 114 3324
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGTT)3123419134202Non coding
2. (ATTT)3129469294703Coding
3. (TCTT)312151149151160Non coding
4. (CAAC)312160869160880Non coding
5. (CTTT)312182036182047Coding
6. (AATT)312277067277078Coding
7. (ATTT)312300838300849Coding
8. (ATTG)312327175327186Non coding
9. (TATT)312403800403811Non coding
10. (AAAT)312497632497643Coding-Non coding
11. (GATT)312541536541547Non coding
12. (TTAT)312680102680113Non coding
13. (AATT)312728539728550Coding
14. (TGGT)312747232747243Non coding
15. (ATTT)312788031788042Non coding
16. (ACTA)312864160864171Non coding
17. (TCAA)312931592931603Coding-Non coding
18. (ATTT)312937374937385Coding
19. (AGAT)31210213931021404Coding
20. (TTCA)31213022721302283Non coding
21. (CTGT)31213155851315596Coding
22. (TCTG)31213565501356561Coding
23. (TCGA)31215306171530628Coding
24. (TATT)31217772821777293Non coding
25. (TTTA)31219124591912470Coding
26. (TTAA)31219507901950801Non coding
27. (TTTG)31220972892097300Coding
28. (TAAA)31221530902153101Non coding
29. (CCCA)31221618692161880Coding
30. (CAAT)31222069912207002Coding
31. (CTTC)31222444102244421Coding
32. (TGGT)31223788492378860Coding
33. (GAGT)31224537152453726Coding
34. (AATT)31224710292471040Coding
35. (TTAT)31226145552614566Coding-Non coding
36. (ATCC)31227047392704750Coding
37. (AAAT)31227280072728018Coding
38. (AATC)31227829192782930Non coding
39. (TATC)31228153042815315Non coding
40. (ATTA)31228481232848134Non coding
41. (AATA)31228912812891292Coding
42. (GATT)31232540693254080Coding
43. (GGTT)31235247053524716Non coding
44. (AATA)31235495883549599Non coding
45. (AAAT)31235611063561117Coding
46. (TTAA)31236625003662511Non coding
47. (CCAT)31236751133675124Coding
48. (CCAT)31237749043774915Coding
49. (ACTC)31238224333822444Non coding
50. (AAAG)31239208353920846Non coding
51. (TAAA)31239384443938455Coding
52. (AAAG)31239569503956961Coding
53. (ATCA)31240082874008298Coding
54. (ATTT)31240083024008313Coding
55. (AATT)31240409904041001Coding
56. (TAAA)31240866464086657Coding
57. (TTTC)31240900764090087Coding
58. (TCAA)31241291764129187Coding
59. (TGGT)31242175794217590Coding
60. (TTTG)31242311224231133Coding
61. (TAAA)31242620654262076Coding
62. (CAAT)31242630384263049Coding-Non coding
63. (AGAA)31242793654279376Coding
64. (CCAA)31242833654283376Coding
65. (GTTT)31244557984455809Coding
66. (CCAA)31245099714509982Coding
67. (AATG)31246057774605788Coding
68. (AAAC)31246173924617403Coding
69. (TACT)31246596574659668Coding
70. (TTAT)31246673124667323Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.