CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8802 (NC_013161 4669814 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 18.03 kb   Average length of SSR  : 13.06 bp
Coding      : 206     Non-Coding           : 45   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 142 78 17 20 257
IMPERFECT 1 70 1662 1252 152 103 3240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CATGGT)318104580104597Coding
2. (TATTAA)318241882241899Coding
3. (TGGTGC)318439825439842Coding
4. (ATGAGG)318501908501925Coding
5. (GGGATA)318998518998535Coding
6. (ACGCCT)31811042211104238Coding
7. (ACCCAA)31815494721549489Non coding
8. (CTGCTA)31820041742004191Coding
9. (AAAGGC)31822459032245920Coding
10. (TCTGCT)31824926012492618Non coding
11. (TAGGAT)31834777933477810Coding
12. (CTTTGG)31835850983585115Coding
13. (TCACCA)31837737063773723Coding
14. (TATCTT)31838260953826112Coding
15. (GATCAT)31841858014185818Coding
16. (GGCACA)31842565034256520Coding
17. (CAGGTG)31843342744334291Non coding
18. (GGGGTT)31843343844334401Non coding
19. (TTTAGG)31844602214460238Coding
20. (GTAGGA)31844686104468627Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.