CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8802 (NC_013161 4669814 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 18.03 kb   Average length of SSR  : 13.06 bp
Coding      : 206     Non-Coding           : 45   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 142 78 17 20 257
IMPERFECT 1 70 1662 1252 152 103 3240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)41275117522Coding
2. (TGTT)3123307833089Non coding
3. (ATTT)3129210792118Coding
4. (CATGGT)318104580104597Coding
5. (TTA)412134417134428Coding
6. (ACT)412136249136260Coding
7. (TCTT)312149131149142Non coding
8. (ACA)412149367149378Coding
9. (CAAC)312158199158210Non coding
10. (CTTT)312178098178109Coding
11. (CAA)412185548185559Coding
12. (TCT)412192714192725Coding
13. (TCT)412204654204665Coding
14. (TATTAA)318241882241899Coding
15. (AATT)312277360277371Coding
16. (ATTT)312301138301149Coding
17. (ATTG)312327225327236Non coding
18. (TCCTA)315329306329320Non coding
19. (ATT)412363816363827Coding
20. (GCT)412370906370917Coding
21. (TATT)312403852403863Non coding
22. (ATTTT)315435535435549Non coding
23. (TGGTGC)318439825439842Coding
24. (TGA)412442982442993Coding
25. (TAT)412469615469626Coding
26. (ATG)412469728469739Coding
27. (ATG)412469965469976Non coding
28. (TAT)412470056470067Non coding
29. (AAAT)312496253496264Coding-Non coding
30. (ATGAGG)318501908501925Coding
31. (GATT)312540447540458Non coding
32. (TCA)412567011567022Coding
33. (ACG)412601739601750Coding
34. (GAA)412625166625177Coding
35. (AAT)412640481640492Coding
36. (AAT)412656185656196Coding
37. (ATAAA)315660923660937Coding
38. (TTC)412675113675124Coding
39. (TTAT)312676528676539Non coding
40. (TTA)412703346703357Non coding
41. (AAT)412704816704827Non coding
42. (CCA)412714584714595Coding
43. (TGCCA)315718282718296Coding
44. (AATT)312733012733023Coding
45. (TGGT)312751652751663Non coding
46. (TAA)412777535777546Coding
47. (GGT)412785397785408Coding
48. (ATTT)312787548787559Non coding
49. (AACTT)315787621787635Non coding
50. (GAG)412831415831426Coding
51. (ATA)412864383864394Coding
52. (ACTA)312864666864677Non coding
53. (ATT)412903281903292Coding
54. (TTA)412909420909431Coding
55. (TCAA)312929523929534Coding-Non coding
56. (ATTT)312935305935316Coding
57. (AAT)412951416951427Coding
58. (AAT)412955827955838Coding
59. (AATT)312988904988915Coding
60. (GGGATA)318998518998535Coding
61. (TGC)41210340581034069Coding
62. (TGC)41210340881034099Coding
63. (GCA)41210760071076018Coding
64. (CAG)51510798311079845Coding
65. (TGT)41210821841082195Coding
66. (ACGCCT)31811042211104238Coding
67. (TGC)41211049031104914Coding
68. (CGT)61811190031119020Coding
69. (TCG)61811194971119514Coding
70. (TTC)41212399661239977Coding
71. (TTA)41212494371249448Coding-Non coding
72. (GCA)41212756491275660Coding
73. (AAT)41212970511297062Non coding
74. (TTCA)31213034201303431Non coding
75. (CTGT)31213163511316362Coding
76. (CGC)41213382401338251Coding
77. (TCTG)31213550901355101Coding
78. (CCA)41214635851463596Coding
79. (TAAAA)31514899341489948Coding
80. (CTT)41214945171494528Coding
81. (GCA)41215081101508121Coding
82. (ATT)41215171271517138Coding
83. (TCGA)31215225821522593Coding
84. (AATT)31215316511531662Coding
85. (ACCCAA)31815494721549489Non coding
86. (TGG)41215595861559597Coding
87. (TTC)41215601281560139Coding
88. (TTTA)31216004511600462Non coding
89. (AAG)41216072881607299Coding
90. (TTG)41216107241610735Coding
91. (TTAT)31216283961628407Non coding
92. (ATT)41216327701632781Non coding
93. (TTTAT)31516906471690661Coding
94. (AGG)51517400611740075Coding
95. (AGTA)31217417851741796Non coding
96. (TATT)31217491121749123Non coding
97. (CAG)41217547971754808Coding
98. (GCT)41217737511773762Coding
99. (TGA)41217941591794170Coding
100. (CAT)41217979341797945Coding
101. (TCA)61818079281807945Coding
102. (CTT)41218119701811981Coding
103. (CCT)41218497471849758Non coding
104. (TTTA)31218822851882296Coding
105. (TTAA)31219206481920659Non coding
106. (GTC)41219501681950179Coding
107. (GTT)41219701941970205Coding
108. (CTGCTA)31820041742004191Coding
109. (AGC)61820135822013599Coding
110. (AAG)41220506962050707Coding
111. (ACA)41220558652055876Coding
112. (TTTG)31220662202066231Coding
113. (AAT)41220852632085274Coding
114. (GGC)41221076502107661Coding
115. (GCTTG)31521142422114256Coding
116. (ACC)41221203582120369Coding
117. (TAAA)31221320942132105Non coding
118. (ACCC)31221408722140883Coding
119. (CAC)41221414002141411Coding
120. (ACA)41221484862148497Coding
121. (GGT)51521770002177014Coding
122. (ATA)41221817962181807Coding
123. (CAAT)31221893462189357Coding
124. (CCG)41222386482238659Coding
125. (AGA)41222421452242156Coding
126. (AAAGGC)31822459032245920Coding
127. (CTTC)31222485382248549Coding
128. (ATT)41222719212271932Coding
129. (TTTTG)31522724522272466Coding
130. (GTG)51522751992275213Coding
131. (TCG)41223136812313692Coding
132. (CCA)41223915782391589Coding
133. (GAGGA)31524052572405271Coding
134. (GAGT)31224508642450875Coding
135. (AAAG)41624648692464884Non coding
136. (GTCC)31224692792469290Coding
137. (AATT)31224731952473206Coding
138. (GAT)41224796752479686Coding
139. (TCTGCT)31824926012492618Non coding
140. (TAA)41224946832494694Non coding
141. (GGA)41224959302495941Coding
142. (AAT)41225091402509151Coding
143. (GATG)31225196422519653Coding
144. (ATT)41225770682577079Coding
145. (TTA)41226186352618646Coding
146. (ATGG)31226209722620983Coding
147. (ATG)41226276362627647Coding
148. (TTC)41226368412636852Coding
149. (GCT)41226524112652422Coding
150. (ATTT)31226857532685764Non coding
151. (ACC)41227035592703570Coding
152. (ATGGA)31527119662711980Coding
153. (ATTT)31227321662732177Coding
154. (TATT)31227436842743695Non coding
155. (AACC)31227667842766795Non coding
156. (AAT)41227725682772579Coding
157. (TTC)41227784332778444Coding
158. (CAT)41228195352819546Coding
159. (TTC)41228720592872070Coding
160. (GTC)41229474652947476Coding
161. (TAAA)31229739042973915Coding-Non coding
162. (ATTT)31230222563022267Coding
163. (AAC)41230252863025297Coding
164. (AATC)31230437513043762Coding
165. (TGA)41230642623064273Coding
166. (CAG)41230806343080645Coding
167. (GAC)41231032983103309Coding
168. (TAA)41231177813117792Coding
169. (TTC)41231234503123461Coding
170. (TCT)41231281423128153Coding
171. (AATT)31231402703140281Coding-Non coding
172. (GCA)41231886933188704Coding
173. (ACG)41232394923239503Coding
174. (ATT)41232709253270936Coding
175. (ATT)41233281983328209Coding
176. (AAATA)31533461163346130Coding
177. (TTATT)31533720993372113Coding
178. (TTAT)31233724193372430Coding
179. (TCACA)31533899703389984Non coding
180. (AAG)41233971213397132Coding
181. (TTA)41234130723413083Coding
182. (ATTA)31234134053413416Non coding
183. (TAAT)31234263683426379Coding-Non coding
184. (CAT)41234321173432128Coding
185. (GATA)31234461423446153Non coding
186. (GAA)51534603423460356Coding
187. (GGA)41234776783477689Coding
188. (TAGGAT)31834777933477810Coding
189. (GATT)31234785003478511Non coding
190. (TTG)41235306973530708Non coding
191. (ATTT)31235334903533501Coding
192. (GGA)41235560133556024Coding
193. (GGAT)31235567753556786Coding
194. (GCA)41235703473570358Coding
195. (CTTTGG)31835850983585115Coding
196. (TTA)41235973143597325Coding
197. (ATAA)31236514513651462Coding-Non coding
198. (TAA)41236819003681911Coding
199. (TTC)41237105433710554Coding
200. (TTC)41237343553734366Coding
201. (AAT)41237561843756195Non coding
202. (TCACCA)31837737063773723Coding
203. (ACTC)31237972523797263Non coding
204. (TATCTT)31838260953826112Coding
205. (CTA)41238676743867685Non coding
206. (CTC)41238954393895450Coding
207. (TGA)41239123353912346Coding
208. (TAAA)31239150743915085Coding
209. (AGC)41239210043921015Coding
210. (AAAG)31239340583934069Coding
211. (TAA)41239522273952238Coding
212. (ATCA)31239894773989488Coding
213. (ATTT)31239894923989503Coding
214. (TGA)41240008234000834Coding
215. (AATT)31240210234021034Coding
216. (GTC)41240275894027600Coding
217. (ATAC)31240460784046089Coding
218. (ACA)41240508264050837Coding
219. (AAC)41240525594052570Coding
220. (ATT)41240673114067322Coding
221. (TAAA)31240674964067507Coding
222. (TTTC)31240709214070932Coding
223. (CAA)41240963744096385Coding
224. (TCAA)31241092034109214Coding
225. (AAG)41241165384116549Coding
226. (GCT)41241274924127503Coding
227. (GCA)41241298364129847Coding
228. (TGGT)31241856074185618Coding
229. (GATCAT)31841858014185818Coding
230. (TAAA)31242325374232548Coding
231. (CAAT)31242335104233521Coding-Non coding
232. (AGAA)31242498374249848Coding
233. (CCAA)31242538374253848Coding
234. (GGCACA)31842565034256520Coding
235. (TCG)41242617294261740Coding
236. (AAG)41242663074266318Coding
237. (TTA)41242675784267589Coding
238. (CTT)41243059364305947Coding
239. (CAGGTG)31843342744334291Non coding
240. (GGGGTT)31843343844334401Non coding
241. (TAAGT)31543884794388493Non coding
242. (GGT)41244101634410174Coding
243. (CCAAG)31544162754416289Coding
244. (TGC)41244450384445049Coding
245. (GTTT)31244472604447271Coding
246. (CTC)41244473094447320Coding
247. (TTTAGG)31844602214460238Coding
248. (GTAGGA)31844686104468627Coding
249. (CCAA)31245021864502197Coding
250. (AAT)41245706504570661Coding
251. (ATC)72145758094575829Coding
252. (AATG)31245964704596481Coding
253. (AAAC)31246080854608096Coding
254. (CAG)41246105674610578Coding
255. (ATTGA)31546497594649773Coding
256. (TACT)31246504114650422Coding
257. (TTAT)31246565554656566Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.