CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8802 (NC_013161 4669814 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 18.03 kb   Average length of SSR  : 13.06 bp
Coding      : 206     Non-Coding           : 45   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 142 78 17 20 257
IMPERFECT 1 70 1662 1252 152 103 3240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCCTA)315329306329320Non coding
2. (ATTTT)315435535435549Non coding
3. (ATAAA)315660923660937Coding
4. (TGCCA)315718282718296Coding
5. (AACTT)315787621787635Non coding
6. (TAAAA)31514899341489948Coding
7. (TTTAT)31516906471690661Coding
8. (GCTTG)31521142422114256Coding
9. (TTTTG)31522724522272466Coding
10. (GAGGA)31524052572405271Coding
11. (ATGGA)31527119662711980Coding
12. (AAATA)31533461163346130Coding
13. (TTATT)31533720993372113Coding
14. (TCACA)31533899703389984Non coding
15. (TAAGT)31543884794388493Non coding
16. (CCAAG)31544162754416289Coding
17. (ATTGA)31546497594649773Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.