CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8802 (NC_013161 4669814 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 18.03 kb   Average length of SSR  : 13.06 bp
Coding      : 206     Non-Coding           : 45   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 142 78 17 20 257
IMPERFECT 1 70 1662 1252 152 103 3240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)41275117522Coding
2. (TTA)412134417134428Coding
3. (ACT)412136249136260Coding
4. (ACA)412149367149378Coding
5. (CAA)412185548185559Coding
6. (TCT)412192714192725Coding
7. (TCT)412204654204665Coding
8. (ATT)412363816363827Coding
9. (GCT)412370906370917Coding
10. (TGA)412442982442993Coding
11. (TAT)412469615469626Coding
12. (ATG)412469728469739Coding
13. (ATG)412469965469976Non coding
14. (TAT)412470056470067Non coding
15. (TCA)412567011567022Coding
16. (ACG)412601739601750Coding
17. (GAA)412625166625177Coding
18. (AAT)412640481640492Coding
19. (AAT)412656185656196Coding
20. (TTC)412675113675124Coding
21. (TTA)412703346703357Non coding
22. (AAT)412704816704827Non coding
23. (CCA)412714584714595Coding
24. (TAA)412777535777546Coding
25. (GGT)412785397785408Coding
26. (GAG)412831415831426Coding
27. (ATA)412864383864394Coding
28. (ATT)412903281903292Coding
29. (TTA)412909420909431Coding
30. (AAT)412951416951427Coding
31. (AAT)412955827955838Coding
32. (TGC)41210340581034069Coding
33. (TGC)41210340881034099Coding
34. (GCA)41210760071076018Coding
35. (CAG)51510798311079845Coding
36. (TGT)41210821841082195Coding
37. (TGC)41211049031104914Coding
38. (CGT)61811190031119020Coding
39. (TCG)61811194971119514Coding
40. (TTC)41212399661239977Coding
41. (TTA)41212494371249448Coding-Non coding
42. (GCA)41212756491275660Coding
43. (AAT)41212970511297062Non coding
44. (CGC)41213382401338251Coding
45. (CCA)41214635851463596Coding
46. (CTT)41214945171494528Coding
47. (GCA)41215081101508121Coding
48. (ATT)41215171271517138Coding
49. (TGG)41215595861559597Coding
50. (TTC)41215601281560139Coding
51. (AAG)41216072881607299Coding
52. (TTG)41216107241610735Coding
53. (ATT)41216327701632781Non coding
54. (AGG)51517400611740075Coding
55. (CAG)41217547971754808Coding
56. (GCT)41217737511773762Coding
57. (TGA)41217941591794170Coding
58. (CAT)41217979341797945Coding
59. (TCA)61818079281807945Coding
60. (CTT)41218119701811981Coding
61. (CCT)41218497471849758Non coding
62. (GTC)41219501681950179Coding
63. (GTT)41219701941970205Coding
64. (AGC)61820135822013599Coding
65. (AAG)41220506962050707Coding
66. (ACA)41220558652055876Coding
67. (AAT)41220852632085274Coding
68. (GGC)41221076502107661Coding
69. (ACC)41221203582120369Coding
70. (CAC)41221414002141411Coding
71. (ACA)41221484862148497Coding
72. (GGT)51521770002177014Coding
73. (ATA)41221817962181807Coding
74. (CCG)41222386482238659Coding
75. (AGA)41222421452242156Coding
76. (ATT)41222719212271932Coding
77. (GTG)51522751992275213Coding
78. (TCG)41223136812313692Coding
79. (CCA)41223915782391589Coding
80. (GAT)41224796752479686Coding
81. (TAA)41224946832494694Non coding
82. (GGA)41224959302495941Coding
83. (AAT)41225091402509151Coding
84. (ATT)41225770682577079Coding
85. (TTA)41226186352618646Coding
86. (ATG)41226276362627647Coding
87. (TTC)41226368412636852Coding
88. (GCT)41226524112652422Coding
89. (ACC)41227035592703570Coding
90. (AAT)41227725682772579Coding
91. (TTC)41227784332778444Coding
92. (CAT)41228195352819546Coding
93. (TTC)41228720592872070Coding
94. (GTC)41229474652947476Coding
95. (AAC)41230252863025297Coding
96. (TGA)41230642623064273Coding
97. (CAG)41230806343080645Coding
98. (GAC)41231032983103309Coding
99. (TAA)41231177813117792Coding
100. (TTC)41231234503123461Coding
101. (TCT)41231281423128153Coding
102. (GCA)41231886933188704Coding
103. (ACG)41232394923239503Coding
104. (ATT)41232709253270936Coding
105. (ATT)41233281983328209Coding
106. (AAG)41233971213397132Coding
107. (TTA)41234130723413083Coding
108. (CAT)41234321173432128Coding
109. (GAA)51534603423460356Coding
110. (GGA)41234776783477689Coding
111. (TTG)41235306973530708Non coding
112. (GGA)41235560133556024Coding
113. (GCA)41235703473570358Coding
114. (TTA)41235973143597325Coding
115. (TAA)41236819003681911Coding
116. (TTC)41237105433710554Coding
117. (TTC)41237343553734366Coding
118. (AAT)41237561843756195Non coding
119. (CTA)41238676743867685Non coding
120. (CTC)41238954393895450Coding
121. (TGA)41239123353912346Coding
122. (AGC)41239210043921015Coding
123. (TAA)41239522273952238Coding
124. (TGA)41240008234000834Coding
125. (GTC)41240275894027600Coding
126. (ACA)41240508264050837Coding
127. (AAC)41240525594052570Coding
128. (ATT)41240673114067322Coding
129. (CAA)41240963744096385Coding
130. (AAG)41241165384116549Coding
131. (GCT)41241274924127503Coding
132. (GCA)41241298364129847Coding
133. (TCG)41242617294261740Coding
134. (AAG)41242663074266318Coding
135. (TTA)41242675784267589Coding
136. (CTT)41243059364305947Coding
137. (GGT)41244101634410174Coding
138. (TGC)41244450384445049Coding
139. (CTC)41244473094447320Coding
140. (AAT)41245706504570661Coding
141. (ATC)72145758094575829Coding
142. (CAG)41246105674610578Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.