CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 8802 (NC_013161 4669814 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 18.03 kb   Average length of SSR  : 13.06 bp
Coding      : 206     Non-Coding           : 45   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 142 78 17 20 257
IMPERFECT 1 70 1662 1252 152 103 3240
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGTT)3123307833089Non coding
2. (ATTT)3129210792118Coding
3. (TCTT)312149131149142Non coding
4. (CAAC)312158199158210Non coding
5. (CTTT)312178098178109Coding
6. (AATT)312277360277371Coding
7. (ATTT)312301138301149Coding
8. (ATTG)312327225327236Non coding
9. (TATT)312403852403863Non coding
10. (AAAT)312496253496264Coding-Non coding
11. (GATT)312540447540458Non coding
12. (TTAT)312676528676539Non coding
13. (AATT)312733012733023Coding
14. (TGGT)312751652751663Non coding
15. (ATTT)312787548787559Non coding
16. (ACTA)312864666864677Non coding
17. (TCAA)312929523929534Coding-Non coding
18. (ATTT)312935305935316Coding
19. (AATT)312988904988915Coding
20. (TTCA)31213034201303431Non coding
21. (CTGT)31213163511316362Coding
22. (TCTG)31213550901355101Coding
23. (TCGA)31215225821522593Coding
24. (AATT)31215316511531662Coding
25. (TTTA)31216004511600462Non coding
26. (TTAT)31216283961628407Non coding
27. (AGTA)31217417851741796Non coding
28. (TATT)31217491121749123Non coding
29. (TTTA)31218822851882296Coding
30. (TTAA)31219206481920659Non coding
31. (TTTG)31220662202066231Coding
32. (TAAA)31221320942132105Non coding
33. (ACCC)31221408722140883Coding
34. (CAAT)31221893462189357Coding
35. (CTTC)31222485382248549Coding
36. (GAGT)31224508642450875Coding
37. (AAAG)41624648692464884Non coding
38. (GTCC)31224692792469290Coding
39. (AATT)31224731952473206Coding
40. (GATG)31225196422519653Coding
41. (ATGG)31226209722620983Coding
42. (ATTT)31226857532685764Non coding
43. (ATTT)31227321662732177Coding
44. (TATT)31227436842743695Non coding
45. (AACC)31227667842766795Non coding
46. (TAAA)31229739042973915Coding-Non coding
47. (ATTT)31230222563022267Coding
48. (AATC)31230437513043762Coding
49. (AATT)31231402703140281Coding-Non coding
50. (TTAT)31233724193372430Coding
51. (ATTA)31234134053413416Non coding
52. (TAAT)31234263683426379Coding-Non coding
53. (GATA)31234461423446153Non coding
54. (GATT)31234785003478511Non coding
55. (ATTT)31235334903533501Coding
56. (GGAT)31235567753556786Coding
57. (ATAA)31236514513651462Coding-Non coding
58. (ACTC)31237972523797263Non coding
59. (TAAA)31239150743915085Coding
60. (AAAG)31239340583934069Coding
61. (ATCA)31239894773989488Coding
62. (ATTT)31239894923989503Coding
63. (AATT)31240210234021034Coding
64. (ATAC)31240460784046089Coding
65. (TAAA)31240674964067507Coding
66. (TTTC)31240709214070932Coding
67. (TCAA)31241092034109214Coding
68. (TGGT)31241856074185618Coding
69. (TAAA)31242325374232548Coding
70. (CAAT)31242335104233521Coding-Non coding
71. (AGAA)31242498374249848Coding
72. (CCAA)31242538374253848Coding
73. (GTTT)31244472604447271Coding
74. (CCAA)31245021864502197Coding
75. (AATG)31245964704596481Coding
76. (AAAC)31246080854608096Coding
77. (TACT)31246504114650422Coding
78. (TTAT)31246565554656566Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.