CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cylindrospermum stagnale PCC 7417 (NC_019757 7003561 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 268     Density of SSR      : 1SSR/ 26.13 kb   Average length of SSR  : 12.94 bp
Coding      : 213     Non-Coding           : 51   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 5 145 90 6 21 268
IMPERFECT 3 198 2126 1691 184 171 4373
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTGCTG)4247356073583Coding
2. (AATATC)3188792587942Coding
3. (ACACCA)424210189210212Coding
4. (CAACAC)530210235210264Coding
5. (CTAATC)31816862501686267Coding
6. (CCCAAG)31822248792224896Coding
7. (CATCAC)31826254882625505Coding
8. (CAGAAC)31835813493581366Coding
9. (ACTAGG)31842113534211370Coding
10. (TTTAGC)31843383914338408Coding
11. (ATTACT)31845339234533940Coding
12. (AAAGCT)31845580354558052Coding
13. (CTTTAT)31846443234644340Coding
14. (CACCAG)31854141215414138Coding
15. (CCACCT)31855600155560032Coding
16. (ACTGCT)31856902725690289Coding
17. (ACCAAC)31857714655771482Coding
18. (TTTTCT)31857743485774365Coding
19. (TAGCGT)31864610836461100Non coding
20. (ACACCC)31864624636462480Coding
21. (TGGCGC)31865765586576575Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.