CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cylindrospermum stagnale PCC 7417 (NC_019757 7003561 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 268     Density of SSR      : 1SSR/ 26.13 kb   Average length of SSR  : 12.94 bp
Coding      : 213     Non-Coding           : 51   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 5 145 90 6 21 268
IMPERFECT 3 198 2126 1691 184 171 4373
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AT)71461226135Coding
2. (CGC)4124197841989Coding
3. (GTGCTG)4247356073583Coding
4. (AATT)3128523085241Non coding
5. (AATATC)3188792587942Coding
6. (CAAA)312120105120116Coding
7. (AGA)618168923168940Coding
8. (ACACCA)424210189210212Coding
9. (CAACAC)530210235210264Coding
10. (TGC)412222851222862Coding
11. (AAAC)312279432279443Non coding
12. (TCG)412312167312178Coding
13. (AAC)412353133353144Coding
14. (CTTG)312360009360020Coding
15. (GCT)412386240386251Coding
16. (GCC)412392081392092Coding
17. (CCA)412425941425952Coding
18. (GCT)412454792454803Coding
19. (ATTTT)315472065472079Coding
20. (TGC)412487896487907Coding
21. (ACCA)312497211497222Coding
22. (TCA)515529707529721Coding
23. (ACG)412560791560802Coding
24. (AGCG)312581310581321Coding
25. (GCTTG)315602318602332Coding
26. (GAA)412610292610303Coding
27. (GCT)412642426642437Coding
28. (CCA)412649944649955Coding
29. (CCG)412649980649991Coding
30. (ATAG)312657246657257Non coding
31. (TGG)412686613686624Coding
32. (CAAA)312736829736840Coding
33. (TGCT)312762534762545Coding
34. (TGC)412785785785796Coding
35. (ATAA)312846752846763Non coding
36. (GCT)412852058852069Coding
37. (CGGT)312902702902713Coding
38. (ATT)412909810909821Coding
39. (TAAG)312917024917035Non coding
40. (TTTG)312947055947066Non coding
41. (TCA)412991491991502Coding
42. (TCA)412991948991959Coding
43. (GCCA)312996434996445Coding
44. (ATTT)31210368711036882Non coding
45. (AATT)31210479081047919Non coding
46. (TGA)41210664011066412Coding
47. (CCAAA)31510816771081691Coding
48. (GCA)41211081671108178Coding
49. (TCAA)31211108421110853Coding
50. (TGGT)31211134061113417Coding
51. (AATT)31211318811131892Coding
52. (AGAA)31211502821150293Coding
53. (AATG)31211650761165087Non coding
54. (CAA)41212626311262642Coding
55. (CCG)41213397081339719Coding
56. (GCA)41213720181372029Coding
57. (TGC)41213877991387810Coding
58. (CGC)41214600501460061Coding
59. (CAC)41215069051506916Coding
60. (CCAC)31215103911510402Coding
61. (TGAT)31216375031637514Non coding
62. (TTC)41216503901650401Coding
63. (ATTG)31216691441669155Coding
64. (CTAATC)31816862501686267Coding
65. (GGT)51516969161696930Coding
66. (TTG)41217081401708151Coding
67. (ACA)41217425931742604Coding
68. (TGG)41217534361753447Coding
69. (ATGG)31217673001767311Coding
70. (AG)61217681881768199Coding
71. (TGG)41218199471819958Coding
72. (AAG)41218393971839408Coding
73. (AGG)41218852141885225Coding
74. (ATG)41219451651945176Coding
75. (AGGC)31219483871948398Coding
76. (AAAT)31219572501957261Non coding
77. (TGG)51519670481967062Coding
78. (CAG)41219947601994771Coding
79. (CCG)41220246922024703Coding
80. (CAG)41220289672028978Coding
81. (GTTT)31220645842064595Non coding
82. (CCA)51520839812083995Coding
83. (ACT)41220840072084018Coding
84. (AT)61221040752104086Non coding
85. (ATTA)31221636172163628Non coding
86. (CAG)41221638332163844Non coding
87. (CCCAAG)31822248792224896Coding
88. (ATT)41222313482231359Coding
89. (GAA)51522537802253794Non coding
90. (AGC)41222890602289071Coding
91. (TCA)41223224622322473Coding
92. (TCA)51523225822322596Coding
93. (AATA)31223371822337193Non coding
94. (CAG)41223724532372464Coding
95. (CAAG)31224018582401869Coding
96. (TATT)31224431872443198Non coding
97. (TTG)41224606632460674Coding
98. (AAT)41225139172513928Non coding
99. (TGC)41225147172514728Coding
100. (ATTT)31225672612567272Coding-Non coding
101. (ATT)41225807902580801Coding
102. (GGT)41225993602599371Coding
103. (GCT)41225994802599491Coding
104. (CATCAC)31826254882625505Coding
105. (ATT)41226309962631007Coding
106. (ATTT)31226378702637881Non coding
107. (CATC)31226822582682269Coding
108. (AATT)31226997952699806Non coding
109. (TGA)41227033622703373Coding
110. (GCT)41227108462710857Coding
111. (AATA)31227410302741041Non coding
112. (CAC)41227676882767699Coding
113. (CCA)51527898562789870Coding
114. (ATT)41227904102790421Coding
115. (TTGT)31228714802871491Coding
116. (TACT)31229027152902726Coding
117. (TTAG)31229142402914251Non coding
118. (AGC)41229508402950851Coding
119. (GCG)41229674262967437Coding
120. (CAT)41229905732990584Coding
121. (GCTG)31230844613084472Coding
122. (GCT)41231091113109122Coding
123. (AT)61231110543111065Non coding
124. (ACC)41231328093132820Coding
125. (CTG)41231581163158127Coding
126. (TGC)41231587603158771Coding
127. (CCG)41232228933222904Coding
128. (CCG)41232235793223590Coding
129. (CAG)41232393793239390Coding
130. (TCAA)31232735283273539Coding
131. (GAT)41232815683281579Non coding
132. (AATC)31232875193287530Non coding
133. (AAC)41233235723323583Coding
134. (ATTA)31233428823342893Non coding
135. (TATT)31233429843342995Non coding
136. (CCAG)31233472673347278Coding
137. (CA)61233682663368277Coding
138. (TAAC)31233726733372684Coding
139. (CAAA)31234361343436145Coding-Non coding
140. (TTC)41234480643448075Coding
141. (CAG)41234774373477448Coding
142. (CAG)41234849393484950Coding
143. (CGA)41234960793496090Coding
144. (GCT)41235222263522237Coding
145. (CAGAAC)31835813493581366Coding
146. (AGG)51535902443590258Coding
147. (AAAT)41636087713608786Coding-Non coding
148. (TAA)41236122533612264Coding
149. (ATAA)31236620523662063Non coding
150. (GAA)51536772383677252Coding
151. (TCAC)31237411093741120Non coding
152. (TGC)51537700683770082Coding
153. (GCG)41237721673772178Coding
154. (ATTT)31237797053779716Coding-Non coding
155. (AGC)41237913363791347Coding
156. (CAT)41238470583847069Coding
157. (GGT)41238561053856116Coding
158. (TTC)41238613343861345Coding
159. (TCA)41238766143876625Coding
160. (TTC)41238851183885129Coding
161. (TCA)41238995453899556Coding
162. (CCA)61839067673906784Coding
163. (GCC)41239198663919877Coding
164. (CAG)41239415673941578Coding
165. (ATC)41240063294006340Coding
166. (CAT)41240334614033472Coding
167. (CCA)41240686804068691Coding
168. (GTCAA)31540755404075554Coding
169. (TTTA)31240877804087791Coding
170. (TTAA)31241164624116473Non coding
171. (CATA)31241228074122818Coding
172. (ACC)41241244774124488Coding
173. (ACTAGG)31842113534211370Coding
174. (AGC)41242243824224393Coding
175. (TGC)41242245534224564Coding
176. (TTAT)31242625704262581Non coding
177. (GATT)31243371184337129Coding
178. (TTTAGC)31843383914338408Coding
179. (ACTC)31243750294375040Coding
180. (AGC)51544172194417233Coding
181. (CGG)41244574114457422Coding
182. (TTTG)31244877014487712Coding
183. (TTAAT)31544971124497126Non coding
184. (CTG)41245152614515272Coding
185. (ATTACT)31845339234533940Coding
186. (AAAGCT)31845580354558052Coding
187. (CTTTAT)31846443234644340Coding
188. (AATT)31246628434662854Non coding
189. (ATGG)31247004424700453Coding
190. (AAAC)31247362864736297Coding
191. (TTA)41247439884743999Coding
192. (TAT)41248902434890254Coding
193. (CCA)41249065434906554Coding
194. (GAT)41249268884926899Coding
195. (TCTT)31249310624931073Coding
196. (GAAA)31249728194972830Coding
197. (AAG)51549990464999060Coding
198. (TTG)41250136245013635Coding
199. (AGA)41250326525032663Coding
200. (GTGG)31250761915076202Coding
201. (GCC)51550969015096915Coding
202. (ATTG)31251880935188104Coding
203. (GGT)41251882035188214Coding
204. (TCA)82451887475188770Coding
205. (CTTG)31251916545191665Coding
206. (AAAT)31252310165231027Coding
207. (AGC)41253013105301321Coding
208. (GCT)41253380675338078Coding
209. (CACCAG)31854141215414138Coding
210. (ATTA)31254507845450795Non coding
211. (GCT)41255210555521066Coding
212. (CCACCT)31855600155560032Coding
213. (TGC)41256198275619838Coding
214. (ACTGCT)31856902725690289Coding
215. (GAT)41257071745707185Coding
216. (CAT)41257567855756796Coding
217. (ACCAAC)31857714655771482Coding
218. (TCT)41257733645773375Coding
219. (TTTTCT)31857743485774365Coding
220. (TCG)41257755935775604Coding
221. (CTG)41257797445779755Coding
222. (CTG)41258508635850874Coding
223. (TGG)51558549105854924Coding
224. (TCC)41258685405868551Coding
225. (GGT)41259243085924319Coding
226. (AGC)51559763655976379Coding
227. (CCAA)31259891445989155Coding
228. (ATAA)31259933155993326Non coding
229. (CCG)41260112816011292Coding
230. (ATTA)31260142396014250Non coding
231. (GGC)41260238926023903Coding
232. (AAG)61860256196025636Coding
233. (AATT)31260337896033800Non coding
234. (AAAG)31260376496037660Coding
235. (GCT)41260549036054914Coding
236. (TATG)31260618546061865Non coding
237. (T)121260685986068609Non coding
238. (AGC)41260705776070588Coding
239. (ATG)41260950156095026Coding
240. (ACCA)41660963286096343Non coding
241. (CAGA)31261030806103091Non coding
242. (AGA)41261224166122427Coding
243. (TCCT)31262412826241293Non coding
244. (CCTT)31262473066247317Coding
245. (AGC)41262782096278220Coding
246. (GAAA)31262902836290294Coding
247. (CAC)41263153016315312Coding
248. (GCG)41263350846335095Non coding
249. (TAAAA)31563492146349228Coding
250. (GCA)41263555546355565Coding
251. (TAGCGT)31864610836461100Non coding
252. (ACACCC)31864624636462480Coding
253. (CAAC)31264853656485376Coding
254. (CAT)41264983076498318Non coding
255. (GCT)41265663386566349Coding
256. (TGGCGC)31865765586576575Coding
257. (TGTC)31266294886629499Coding
258. (AGTA)31267471836747194Non coding
259. (CGC)41267556136755624Coding
260. (GCAA)31267592436759254Coding
261. (GCT)41267751546775165Coding
262. (AATT)31268133516813362Non coding
263. (ATCA)31268680516868062Non coding
264. (ACTG)31268924766892487Coding
265. (AATT)31269520636952074Non coding
266. (GCA)41269614666961477Coding
267. (AGGG)31269974406997451Non coding
268. (GGTG)31270005187000529Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.