CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cylindrospermum stagnale PCC 7417 (NC_019757 7003561 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 268     Density of SSR      : 1SSR/ 26.13 kb   Average length of SSR  : 12.94 bp
Coding      : 213     Non-Coding           : 51   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 5 145 90 6 21 268
IMPERFECT 3 198 2126 1691 184 171 4373
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGC)4124197841989Coding
2. (AGA)618168923168940Coding
3. (TGC)412222851222862Coding
4. (TCG)412312167312178Coding
5. (AAC)412353133353144Coding
6. (GCT)412386240386251Coding
7. (GCC)412392081392092Coding
8. (CCA)412425941425952Coding
9. (GCT)412454792454803Coding
10. (TGC)412487896487907Coding
11. (TCA)515529707529721Coding
12. (ACG)412560791560802Coding
13. (GAA)412610292610303Coding
14. (GCT)412642426642437Coding
15. (CCA)412649944649955Coding
16. (CCG)412649980649991Coding
17. (TGG)412686613686624Coding
18. (TGC)412785785785796Coding
19. (GCT)412852058852069Coding
20. (ATT)412909810909821Coding
21. (TCA)412991491991502Coding
22. (TCA)412991948991959Coding
23. (TGA)41210664011066412Coding
24. (GCA)41211081671108178Coding
25. (CAA)41212626311262642Coding
26. (CCG)41213397081339719Coding
27. (GCA)41213720181372029Coding
28. (TGC)41213877991387810Coding
29. (CGC)41214600501460061Coding
30. (CAC)41215069051506916Coding
31. (TTC)41216503901650401Coding
32. (GGT)51516969161696930Coding
33. (TTG)41217081401708151Coding
34. (ACA)41217425931742604Coding
35. (TGG)41217534361753447Coding
36. (TGG)41218199471819958Coding
37. (AAG)41218393971839408Coding
38. (AGG)41218852141885225Coding
39. (ATG)41219451651945176Coding
40. (TGG)51519670481967062Coding
41. (CAG)41219947601994771Coding
42. (CCG)41220246922024703Coding
43. (CAG)41220289672028978Coding
44. (CCA)51520839812083995Coding
45. (ACT)41220840072084018Coding
46. (CAG)41221638332163844Non coding
47. (ATT)41222313482231359Coding
48. (GAA)51522537802253794Non coding
49. (AGC)41222890602289071Coding
50. (TCA)41223224622322473Coding
51. (TCA)51523225822322596Coding
52. (CAG)41223724532372464Coding
53. (TTG)41224606632460674Coding
54. (AAT)41225139172513928Non coding
55. (TGC)41225147172514728Coding
56. (ATT)41225807902580801Coding
57. (GGT)41225993602599371Coding
58. (GCT)41225994802599491Coding
59. (ATT)41226309962631007Coding
60. (TGA)41227033622703373Coding
61. (GCT)41227108462710857Coding
62. (CAC)41227676882767699Coding
63. (CCA)51527898562789870Coding
64. (ATT)41227904102790421Coding
65. (AGC)41229508402950851Coding
66. (GCG)41229674262967437Coding
67. (CAT)41229905732990584Coding
68. (GCT)41231091113109122Coding
69. (ACC)41231328093132820Coding
70. (CTG)41231581163158127Coding
71. (TGC)41231587603158771Coding
72. (CCG)41232228933222904Coding
73. (CCG)41232235793223590Coding
74. (CAG)41232393793239390Coding
75. (GAT)41232815683281579Non coding
76. (AAC)41233235723323583Coding
77. (TTC)41234480643448075Coding
78. (CAG)41234774373477448Coding
79. (CAG)41234849393484950Coding
80. (CGA)41234960793496090Coding
81. (GCT)41235222263522237Coding
82. (AGG)51535902443590258Coding
83. (TAA)41236122533612264Coding
84. (GAA)51536772383677252Coding
85. (TGC)51537700683770082Coding
86. (GCG)41237721673772178Coding
87. (AGC)41237913363791347Coding
88. (CAT)41238470583847069Coding
89. (GGT)41238561053856116Coding
90. (TTC)41238613343861345Coding
91. (TCA)41238766143876625Coding
92. (TTC)41238851183885129Coding
93. (TCA)41238995453899556Coding
94. (CCA)61839067673906784Coding
95. (GCC)41239198663919877Coding
96. (CAG)41239415673941578Coding
97. (ATC)41240063294006340Coding
98. (CAT)41240334614033472Coding
99. (CCA)41240686804068691Coding
100. (ACC)41241244774124488Coding
101. (AGC)41242243824224393Coding
102. (TGC)41242245534224564Coding
103. (AGC)51544172194417233Coding
104. (CGG)41244574114457422Coding
105. (CTG)41245152614515272Coding
106. (TTA)41247439884743999Coding
107. (TAT)41248902434890254Coding
108. (CCA)41249065434906554Coding
109. (GAT)41249268884926899Coding
110. (AAG)51549990464999060Coding
111. (TTG)41250136245013635Coding
112. (AGA)41250326525032663Coding
113. (GCC)51550969015096915Coding
114. (GGT)41251882035188214Coding
115. (TCA)82451887475188770Coding
116. (AGC)41253013105301321Coding
117. (GCT)41253380675338078Coding
118. (GCT)41255210555521066Coding
119. (TGC)41256198275619838Coding
120. (GAT)41257071745707185Coding
121. (CAT)41257567855756796Coding
122. (TCT)41257733645773375Coding
123. (TCG)41257755935775604Coding
124. (CTG)41257797445779755Coding
125. (CTG)41258508635850874Coding
126. (TGG)51558549105854924Coding
127. (TCC)41258685405868551Coding
128. (GGT)41259243085924319Coding
129. (AGC)51559763655976379Coding
130. (CCG)41260112816011292Coding
131. (GGC)41260238926023903Coding
132. (AAG)61860256196025636Coding
133. (GCT)41260549036054914Coding
134. (AGC)41260705776070588Coding
135. (ATG)41260950156095026Coding
136. (AGA)41261224166122427Coding
137. (AGC)41262782096278220Coding
138. (CAC)41263153016315312Coding
139. (GCG)41263350846335095Non coding
140. (GCA)41263555546355565Coding
141. (CAT)41264983076498318Non coding
142. (GCT)41265663386566349Coding
143. (CGC)41267556136755624Coding
144. (GCT)41267751546775165Coding
145. (GCA)41269614666961477Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.