CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cylindrospermum stagnale PCC 7417 (NC_019757 7003561 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 268     Density of SSR      : 1SSR/ 26.13 kb   Average length of SSR  : 12.94 bp
Coding      : 213     Non-Coding           : 51   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 5 145 90 6 21 268
IMPERFECT 3 198 2126 1691 184 171 4373
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATT)3128523085241Non coding
2. (CAAA)312120105120116Coding
3. (AAAC)312279432279443Non coding
4. (CTTG)312360009360020Coding
5. (ACCA)312497211497222Coding
6. (AGCG)312581310581321Coding
7. (ATAG)312657246657257Non coding
8. (CAAA)312736829736840Coding
9. (TGCT)312762534762545Coding
10. (ATAA)312846752846763Non coding
11. (CGGT)312902702902713Coding
12. (TAAG)312917024917035Non coding
13. (TTTG)312947055947066Non coding
14. (GCCA)312996434996445Coding
15. (ATTT)31210368711036882Non coding
16. (AATT)31210479081047919Non coding
17. (TCAA)31211108421110853Coding
18. (TGGT)31211134061113417Coding
19. (AATT)31211318811131892Coding
20. (AGAA)31211502821150293Coding
21. (AATG)31211650761165087Non coding
22. (CCAC)31215103911510402Coding
23. (TGAT)31216375031637514Non coding
24. (ATTG)31216691441669155Coding
25. (ATGG)31217673001767311Coding
26. (AGGC)31219483871948398Coding
27. (AAAT)31219572501957261Non coding
28. (GTTT)31220645842064595Non coding
29. (ATTA)31221636172163628Non coding
30. (AATA)31223371822337193Non coding
31. (CAAG)31224018582401869Coding
32. (TATT)31224431872443198Non coding
33. (ATTT)31225672612567272Coding-Non coding
34. (ATTT)31226378702637881Non coding
35. (CATC)31226822582682269Coding
36. (AATT)31226997952699806Non coding
37. (AATA)31227410302741041Non coding
38. (TTGT)31228714802871491Coding
39. (TACT)31229027152902726Coding
40. (TTAG)31229142402914251Non coding
41. (GCTG)31230844613084472Coding
42. (TCAA)31232735283273539Coding
43. (AATC)31232875193287530Non coding
44. (ATTA)31233428823342893Non coding
45. (TATT)31233429843342995Non coding
46. (CCAG)31233472673347278Coding
47. (TAAC)31233726733372684Coding
48. (CAAA)31234361343436145Coding-Non coding
49. (AAAT)41636087713608786Coding-Non coding
50. (ATAA)31236620523662063Non coding
51. (TCAC)31237411093741120Non coding
52. (ATTT)31237797053779716Coding-Non coding
53. (TTTA)31240877804087791Coding
54. (TTAA)31241164624116473Non coding
55. (CATA)31241228074122818Coding
56. (TTAT)31242625704262581Non coding
57. (GATT)31243371184337129Coding
58. (ACTC)31243750294375040Coding
59. (TTTG)31244877014487712Coding
60. (AATT)31246628434662854Non coding
61. (ATGG)31247004424700453Coding
62. (AAAC)31247362864736297Coding
63. (TCTT)31249310624931073Coding
64. (GAAA)31249728194972830Coding
65. (GTGG)31250761915076202Coding
66. (ATTG)31251880935188104Coding
67. (CTTG)31251916545191665Coding
68. (AAAT)31252310165231027Coding
69. (ATTA)31254507845450795Non coding
70. (CCAA)31259891445989155Coding
71. (ATAA)31259933155993326Non coding
72. (ATTA)31260142396014250Non coding
73. (AATT)31260337896033800Non coding
74. (AAAG)31260376496037660Coding
75. (TATG)31260618546061865Non coding
76. (ACCA)41660963286096343Non coding
77. (CAGA)31261030806103091Non coding
78. (TCCT)31262412826241293Non coding
79. (CCTT)31262473066247317Coding
80. (GAAA)31262902836290294Coding
81. (CAAC)31264853656485376Coding
82. (TGTC)31266294886629499Coding
83. (AGTA)31267471836747194Non coding
84. (GCAA)31267592436759254Coding
85. (AATT)31268133516813362Non coding
86. (ATCA)31268680516868062Non coding
87. (ACTG)31268924766892487Coding
88. (AATT)31269520636952074Non coding
89. (AGGG)31269974406997451Non coding
90. (GGTG)31270005187000529Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.