CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Dactylococcopsis salina PCC 8305 (NC_019780 3781009 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 209     Density of SSR      : 1SSR/ 18 kb   Average length of SSR  : 13.05 bp
Coding      : 135     Non-Coding           : 70   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 102 78 10 15 209
IMPERFECT 1 158 1303 1009 120 99 2690
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCG)5152876728781Coding
2. (ATCG)3123310233113Non coding
3. (TGA)4129268992700Coding
4. (TGTC)312107115107126Coding
5. (TGAAA)315116755116769Non coding
6. (CGAT)312131518131529Coding
7. (CGG)412156618156629Coding
8. (GGC)412156718156729Coding
9. (CGAT)312181532181543Coding
10. (GCTGGT)424182925182948Coding
11. (TCGA)312202565202576Coding
12. (CTT)412290358290369Coding
13. (CTT)412292920292931Coding
14. (TCGA)312304354304365Coding
15. (CCG)412309907309918Coding
16. (CCGTTA)318323163323180Coding
17. (GATT)312371789371800Coding
18. (TTG)412373620373631Coding
19. (ATT)412382859382870Coding
20. (TTTG)312490884490895Coding
21. (AGT)412519870519881Non coding
22. (AGGA)312534185534196Non coding
23. (ATTG)312538076538087Non coding
24. (AACA)312554350554361Non coding
25. (TAAA)312565682565693Coding
26. (TTTTA)315635570635584Non coding
27. (TAAG)312707270707281Coding-Non coding
28. (GAT)412723415723426Coding
29. (CTC)412730378730389Coding
30. (ATAA)312755452755463Coding
31. (CCT)412777635777646Non coding
32. (CCT)412777665777676Non coding
33. (TCGA)312808210808221Coding
34. (ATTT)312811093811104Coding
35. (TTC)412812364812375Coding
36. (GCC)412823448823459Coding
37. (GCG)412839842839853Coding
38. (ATCA)312848282848293Coding
39. (TAACGG)318855389855406Coding
40. (TAACGG)318855689855706Coding
41. (TAACGG)318855986856003Coding
42. (TAACGG)318856286856303Coding
43. (AGA)412859482859493Coding
44. (AGA)412861930861941Coding
45. (CGAT)312911355911366Coding
46. (GCG)41210092911009302Coding
47. (GA)61211033811103392Non coding
48. (GATT)31211624041162415Non coding
49. (ATCA)31211654051165416Non coding
50. (ATCA)31211656271165638Non coding
51. (TATT)31211796701179681Coding
52. (CAA)41211861301186141Non coding
53. (TCAT)31212094731209484Non coding
54. (ATCG)31212294911229502Coding
55. (TGAAA)31512546911254705Coding-Non coding
56. (ATCA)31213264481326459Non coding
57. (ACGA)31213704091370420Coding
58. (TTG)41213759611375972Coding
59. (TCT)41213957921395803Coding
60. (AGT)41213963461396357Coding
61. (AAAGTG)31813995831399600Coding
62. (TCTG)31214013701401381Non coding
63. (TCTG)31214036291403640Non coding
64. (ACT)41214180071418018Coding
65. (TCGA)31214247771424788Coding
66. (GAT)41214363731436384Coding
67. (TGA)41214506051450616Coding
68. (AGACTT)31814848371484854Coding
69. (TTC)41214917551491766Coding
70. (CGAT)31214984901498501Coding
71. (GAA)51515120231512037Coding
72. (GTTT)31215129161512927Non coding
73. (CGAT)31215806691580680Coding
74. (AATT)31216000881600099Coding
75. (GAA)51516355721635586Coding
76. (GAA)41216363401636351Coding
77. (CAG)41216375551637566Coding
78. (GTA)41216426421642653Non coding
79. (TTCT)31216608161660827Coding
80. (ATCG)31216619991662010Coding
81. (CGC)41216670711667082Coding
82. (TAAGCA)31816677621667779Coding
83. (TTA)41216770621677073Coding
84. (AAAT)31216923541692365Coding
85. (GGC)41217666241766635Coding
86. (TTCT)31218071931807204Non coding
87. (TTTCA)31518245881824602Coding-Non coding
88. (GGTT)31218378501837861Coding
89. (TC)61218487731848784Coding
90. (AAGA)31218517931851804Non coding
91. (GAT)41218523361852347Coding
92. (GTGAA)31518700321870046Non coding
93. (CGAT)31218896451889656Non coding
94. (CAA)41219157231915734Coding
95. (GTG)41219389011938912Coding
96. (CAA)41219508561950867Coding
97. (AAGA)31220085872008598Coding
98. (TCGA)31220121062012117Coding
99. (GAACCT)63620644042064439Coding
100. (GCTT)31221007812100792Coding
101. (AGAA)31221212382121249Non coding
102. (TGAAA)31521501982150212Non coding
103. (AATTGA)31821610192161036Coding
104. (AGA)41221848042184815Coding
105. (AGA)41221872192187230Coding
106. (ATTT)31222012812201292Coding
107. (ATCG)31222208952220906Coding
108. (AGA)41222226652222676Coding
109. (GAT)41222320882232099Coding
110. (AAG)41222373092237320Coding
111. (TTTG)31222549672254978Non coding
112. (GATC)31222573912257402Non coding
113. (TAAG)31222651042265115Non coding
114. (AATC)31222931612293172Non coding
115. (TTAT)31223195642319575Coding
116. (TTC)41223346882334699Coding
117. (CTTT)31223534022353413Non coding
118. (CT)61223737542373765Non coding
119. (CGA)61823814082381425Coding
120. (CCATTA)31823814532381470Coding
121. (GCC)41223903552390366Coding
122. (CAA)51523907512390765Coding
123. (TCTT)31223909242390935Non coding
124. (GATC)41624031442403159Non coding
125. (CTTG)31224358492435860Non coding
126. (ATTA)31224618962461907Coding-Non coding
127. (TAGT)31224764142476425Non coding
128. (AAG)41224771722477183Coding
129. (CTT)41224968722496883Coding
130. (TCC)41225400312540042Coding
131. (TGA)41225540162554027Coding
132. (CGAT)31225576852557696Coding
133. (CTACGA)31825904092590426Non coding
134. (CGAT)31225919192591930Coding
135. (ATT)51525982982598312Coding-Non coding
136. (TAA)41226103942610405Coding
137. (CTT)41226630202663031Coding
138. (TCGA)31227095552709566Coding
139. (GCC)41227423042742315Coding
140. (GAT)51527632842763298Non coding
141. (GAC)41227633382763349Non coding
142. (GAC)41227633772763388Non coding
143. (GAC)41227634282763439Non coding
144. (GAT)41227634822763493Non coding
145. (GAT)41227635722763583Non coding
146. (GAT)41227636232763634Non coding
147. (GAT)41227636742763685Non coding
148. (GAT)41227637222763733Non coding
149. (GAC)41227638062763817Non coding
150. (GAC)41227638452763856Non coding
151. (GAC)41227640732764084Non coding
152. (GAC)41227641752764186Non coding
153. (GAT)41227642322764243Non coding
154. (CGA)51527642732764287Non coding
155. (GAT)41227643372764348Non coding
156. (AAG)41228108292810840Coding
157. (AAG)41228119872811998Coding
158. (AGA)41228130302813041Coding
159. (CTTG)31228196862819697Coding
160. (CGT)51528404682840482Coding
161. (CGT)41228410532841064Coding
162. (TTCGGG)31828414272841444Coding
163. (TTTAGT)31828668862866903Coding
164. (AGA)41228839532883964Coding
165. (AGA)41228863682886379Coding
166. (TTA)41229312402931251Coding
167. (ATG)41229643792964390Coding
168. (GGC)41229803402980351Coding
169. (TCCTT)42029983062998325Coding
170. (TTC)41230358683035879Coding
171. (AAGA)31230377253037736Coding
172. (CGG)41230582953058306Coding
173. (GAAT)31230982433098254Non coding
174. (GAT)41231006373100648Coding
175. (CTCA)31231103283110339Non coding
176. (TTAA)31231275053127516Non coding
177. (TCAT)31231388713138882Coding
178. (TCA)41231434553143466Coding
179. (GCG)41231841513184162Coding
180. (TCC)41232350873235098Coding
181. (GGAG)31232551923255203Non coding
182. (TTC)41232705813270592Coding
183. (ATC)41232846833284694Coding
184. (GTC)41232937653293776Coding
185. (ATCG)31233945953394606Coding
186. (AAAG)31234164833416494Non coding
187. (AAAG)31234165883416599Non coding
188. (AAAG)31234166933416704Non coding
189. (AAAG)31234167983416809Non coding
190. (GAAA)31234169333416944Non coding
191. (GAT)41234221563422167Non coding
192. (TTC)41234362913436302Coding
193. (CTC)41234976653497676Coding
194. (ATC)41235154973515508Coding
195. (TTC)51535200153520029Coding
196. (AACC)31235341603534171Coding
197. (GCAA)31235808873580898Coding
198. (TC)61235919583591969Coding
199. (TGA)41235959903596001Coding
200. (ATCG)31236154503615461Non coding
201. (ATCG)31236165593616570Non coding
202. (TGAAA)31536225393622553Non coding
203. (TGAAA)31536226213622635Non coding
204. (TGAAA)31536229793622993Non coding
205. (AACA)31236244053624416Coding
206. (TTA)41236338123633823Non coding
207. (TTC)41237146493714660Coding
208. (GTC)41237255043725515Coding
209. (AAG)51537257313725745Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.