CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Dactylococcopsis salina PCC 8305 (NC_019780 3781009 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 209     Density of SSR      : 1SSR/ 18 kb   Average length of SSR  : 13.05 bp
Coding      : 135     Non-Coding           : 70   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 102 78 10 15 209
IMPERFECT 1 158 1303 1009 120 99 2690
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCG)5152876728781Coding
2. (TGA)4129268992700Coding
3. (CGG)412156618156629Coding
4. (GGC)412156718156729Coding
5. (CTT)412290358290369Coding
6. (CTT)412292920292931Coding
7. (CCG)412309907309918Coding
8. (TTG)412373620373631Coding
9. (ATT)412382859382870Coding
10. (AGT)412519870519881Non coding
11. (GAT)412723415723426Coding
12. (CTC)412730378730389Coding
13. (CCT)412777635777646Non coding
14. (CCT)412777665777676Non coding
15. (TTC)412812364812375Coding
16. (GCC)412823448823459Coding
17. (GCG)412839842839853Coding
18. (AGA)412859482859493Coding
19. (AGA)412861930861941Coding
20. (GCG)41210092911009302Coding
21. (CAA)41211861301186141Non coding
22. (TTG)41213759611375972Coding
23. (TCT)41213957921395803Coding
24. (AGT)41213963461396357Coding
25. (ACT)41214180071418018Coding
26. (GAT)41214363731436384Coding
27. (TGA)41214506051450616Coding
28. (TTC)41214917551491766Coding
29. (GAA)51515120231512037Coding
30. (GAA)51516355721635586Coding
31. (GAA)41216363401636351Coding
32. (CAG)41216375551637566Coding
33. (GTA)41216426421642653Non coding
34. (CGC)41216670711667082Coding
35. (TTA)41216770621677073Coding
36. (GGC)41217666241766635Coding
37. (GAT)41218523361852347Coding
38. (CAA)41219157231915734Coding
39. (GTG)41219389011938912Coding
40. (CAA)41219508561950867Coding
41. (AGA)41221848042184815Coding
42. (AGA)41221872192187230Coding
43. (AGA)41222226652222676Coding
44. (GAT)41222320882232099Coding
45. (AAG)41222373092237320Coding
46. (TTC)41223346882334699Coding
47. (CGA)61823814082381425Coding
48. (GCC)41223903552390366Coding
49. (CAA)51523907512390765Coding
50. (AAG)41224771722477183Coding
51. (CTT)41224968722496883Coding
52. (TCC)41225400312540042Coding
53. (TGA)41225540162554027Coding
54. (ATT)51525982982598312Coding-Non coding
55. (TAA)41226103942610405Coding
56. (CTT)41226630202663031Coding
57. (GCC)41227423042742315Coding
58. (GAT)51527632842763298Non coding
59. (GAC)41227633382763349Non coding
60. (GAC)41227633772763388Non coding
61. (GAC)41227634282763439Non coding
62. (GAT)41227634822763493Non coding
63. (GAT)41227635722763583Non coding
64. (GAT)41227636232763634Non coding
65. (GAT)41227636742763685Non coding
66. (GAT)41227637222763733Non coding
67. (GAC)41227638062763817Non coding
68. (GAC)41227638452763856Non coding
69. (GAC)41227640732764084Non coding
70. (GAC)41227641752764186Non coding
71. (GAT)41227642322764243Non coding
72. (CGA)51527642732764287Non coding
73. (GAT)41227643372764348Non coding
74. (AAG)41228108292810840Coding
75. (AAG)41228119872811998Coding
76. (AGA)41228130302813041Coding
77. (CGT)51528404682840482Coding
78. (CGT)41228410532841064Coding
79. (AGA)41228839532883964Coding
80. (AGA)41228863682886379Coding
81. (TTA)41229312402931251Coding
82. (ATG)41229643792964390Coding
83. (GGC)41229803402980351Coding
84. (TTC)41230358683035879Coding
85. (CGG)41230582953058306Coding
86. (GAT)41231006373100648Coding
87. (TCA)41231434553143466Coding
88. (GCG)41231841513184162Coding
89. (TCC)41232350873235098Coding
90. (TTC)41232705813270592Coding
91. (ATC)41232846833284694Coding
92. (GTC)41232937653293776Coding
93. (GAT)41234221563422167Non coding
94. (TTC)41234362913436302Coding
95. (CTC)41234976653497676Coding
96. (ATC)41235154973515508Coding
97. (TTC)51535200153520029Coding
98. (TGA)41235959903596001Coding
99. (TTA)41236338123633823Non coding
100. (TTC)41237146493714660Coding
101. (GTC)41237255043725515Coding
102. (AAG)51537257313725745Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.