CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Dactylococcopsis salina PCC 8305 (NC_019780 3781009 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 209     Density of SSR      : 1SSR/ 18 kb   Average length of SSR  : 13.05 bp
Coding      : 135     Non-Coding           : 70   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 102 78 10 15 209
IMPERFECT 1 158 1303 1009 120 99 2690
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATCG)3123310233113Non coding
2. (TGTC)312107115107126Coding
3. (CGAT)312131518131529Coding
4. (CGAT)312181532181543Coding
5. (TCGA)312202565202576Coding
6. (TCGA)312304354304365Coding
7. (GATT)312371789371800Coding
8. (TTTG)312490884490895Coding
9. (AGGA)312534185534196Non coding
10. (ATTG)312538076538087Non coding
11. (AACA)312554350554361Non coding
12. (TAAA)312565682565693Coding
13. (TAAG)312707270707281Coding-Non coding
14. (ATAA)312755452755463Coding
15. (TCGA)312808210808221Coding
16. (ATTT)312811093811104Coding
17. (ATCA)312848282848293Coding
18. (CGAT)312911355911366Coding
19. (GATT)31211624041162415Non coding
20. (ATCA)31211654051165416Non coding
21. (ATCA)31211656271165638Non coding
22. (TATT)31211796701179681Coding
23. (TCAT)31212094731209484Non coding
24. (ATCG)31212294911229502Coding
25. (ATCA)31213264481326459Non coding
26. (ACGA)31213704091370420Coding
27. (TCTG)31214013701401381Non coding
28. (TCTG)31214036291403640Non coding
29. (TCGA)31214247771424788Coding
30. (CGAT)31214984901498501Coding
31. (GTTT)31215129161512927Non coding
32. (CGAT)31215806691580680Coding
33. (AATT)31216000881600099Coding
34. (TTCT)31216608161660827Coding
35. (ATCG)31216619991662010Coding
36. (AAAT)31216923541692365Coding
37. (TTCT)31218071931807204Non coding
38. (GGTT)31218378501837861Coding
39. (AAGA)31218517931851804Non coding
40. (CGAT)31218896451889656Non coding
41. (AAGA)31220085872008598Coding
42. (TCGA)31220121062012117Coding
43. (GCTT)31221007812100792Coding
44. (AGAA)31221212382121249Non coding
45. (ATTT)31222012812201292Coding
46. (ATCG)31222208952220906Coding
47. (TTTG)31222549672254978Non coding
48. (GATC)31222573912257402Non coding
49. (TAAG)31222651042265115Non coding
50. (AATC)31222931612293172Non coding
51. (TTAT)31223195642319575Coding
52. (CTTT)31223534022353413Non coding
53. (TCTT)31223909242390935Non coding
54. (GATC)41624031442403159Non coding
55. (CTTG)31224358492435860Non coding
56. (ATTA)31224618962461907Coding-Non coding
57. (TAGT)31224764142476425Non coding
58. (CGAT)31225576852557696Coding
59. (CGAT)31225919192591930Coding
60. (TCGA)31227095552709566Coding
61. (CTTG)31228196862819697Coding
62. (AAGA)31230377253037736Coding
63. (GAAT)31230982433098254Non coding
64. (CTCA)31231103283110339Non coding
65. (TTAA)31231275053127516Non coding
66. (TCAT)31231388713138882Coding
67. (GGAG)31232551923255203Non coding
68. (ATCG)31233945953394606Coding
69. (AAAG)31234164833416494Non coding
70. (AAAG)31234165883416599Non coding
71. (AAAG)31234166933416704Non coding
72. (AAAG)31234167983416809Non coding
73. (GAAA)31234169333416944Non coding
74. (AACC)31235341603534171Coding
75. (GCAA)31235808873580898Coding
76. (ATCG)31236154503615461Non coding
77. (ATCG)31236165593616570Non coding
78. (AACA)31236244053624416Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.