CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Geitlerinema sp. PCC 7407 (NC_019703 4681112 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.21 kb   Average length of SSR  : 12.34 bp
Coding      : 3488     Non-Coding           : 359   Coding and Non-Coding : 26
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 213 58 12 19 302
IMPERFECT 0 151 2471 988 120 143 3873
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. GA112941129421Coding
2. GC113245032460Coding
3. CG113336933379Coding
4. CT116547965489Non coding
5. TC128389283903Non coding
6. GA11123023123033Coding
7. CG11153060153070Coding
8. CT11154460154470Non coding
9. CG11210498210508Coding
10. TG11226322226332Coding
11. TG11241658241668Non coding
12. AG11281659281669Non coding
13. GA12322813322824Coding
14. CG11343803343813Coding
15. TC11347157347167Coding
16. CG11448635448645Coding
17. GC12448865448876Coding
18. GT11538294538304Coding-Non coding
19. CT12727232727243Coding
20. CT11735376735386Non coding
21. CG11861354861364Coding
22. CG11881251881261Coding
23. CT11963800963810Coding
24. CG12966211966222Coding
25. GC11970926970936Coding
26. GC1110413571041367Coding
27. AG1111239401123950Coding
28. GC1211463651146376Coding
29. CT1111686051168615Non coding
30. CG1111965361196546Coding
31. CG1112096841209694Coding
32. TC1112457481245758Non coding
33. GC1212514941251505Coding
34. GA1112526961252706Coding
35. AG1112674961267506Coding
36. CG1112823891282399Coding
37. GC1112942101294220Coding
38. GT1113650631365073Coding
39. AG1213708881370899Coding-Non coding
40. CG1114203811420391Coding
41. GA1115184241518434Coding
42. CG1115779771577987Coding
43. GC1215782691578280Coding
44. GA1115920671592077Coding
45. GC1116106361610646Coding
46. AT1217175881717599Coding
47. GC1117405481740558Coding
48. AC1217647551764766Non coding
49. GA1218029261802937Coding
50. CT1118399681839978Non coding
51. TG1118455951845605Non coding
52. GA1118838511883861Coding
53. GC1118907541890764Coding
54. TG1119457041945714Non coding
55. CT1119491001949110Coding
56. AG1119940021994012Non coding
57. TG1119948291994839Non coding
58. AG1120074672007477Non coding
59. CG1120091622009172Coding
60. GA1120430512043061Coding
61. TC1220526262052637Coding
62. GA1220690522069063Coding
63. CG1121012032101213Coding
64. CG1121396662139676Coding
65. TC1221485142148525Coding-Non coding
66. CG1121551202155130Coding
67. GC1321641902164202Coding
68. TC1221706222170633Coding
69. GA1121924372192447Coding
70. CT1122062472206257Coding
71. TC1122248702224880Non coding
72. CT1122284922228502Coding
73. AG1122288142228824Coding
74. GC1122344952234505Coding
75. TG1422672392267252Coding
76. GA1122803012280311Coding
77. GC1122970542297064Coding
78. AG1123284632328473Non coding
79. AG1423519072351920Coding
80. TG1123589242358934Coding
81. CT1123728652372875Coding
82. TC1123744972374507Coding
83. AC1124210052421015Coding
84. GA1124226462422656Coding
85. AG1124269752426985Coding
86. GA1624461972446212Coding
87. TC1224486752448686Coding
88. GC1124542422454252Coding
89. TC1624906592490674Non coding
90. TC1125197172519727Coding
91. GC1125237082523718Coding
92. AG1226122212612232Coding
93. GA1226598142659825Coding
94. AG1126718312671841Non coding
95. GA1226761372676148Coding
96. AG1126793092679319Non coding
97. TC1227039922704003Coding
98. CA1127284102728420Coding
99. TC1227434592743470Coding
100. CG1228678412867852Coding
101. TC1130081993008209Non coding
102. CG1130517283051738Coding
103. CT1231004613100472Non coding
104. CG1231031833103194Coding
105. CT1131045623104572Non coding
106. AG1131465163146526Coding
107. CT1332042663204278Coding
108. GC1132088803208890Coding
109. GA1132152213215231Non coding
110. AG1132256573225667Non coding
111. CT1132276803227690Coding
112. GC1132343683234378Coding
113. AG1332690513269063Coding
114. GC1132784593278469Coding
115. AG1232841213284132Coding
116. CG1133076353307645Coding
117. CG1133320543332064Non coding
118. GC1133759743375984Coding
119. CG1133792173379227Coding
120. CG1133835863383596Coding
121. TC1134425993442609Coding
122. CT1134506713450681Coding
123. GT1134589743458984Non coding
124. TC1134632223463232Coding
125. CG1135282773528287Coding
126. AC1135599943560004Non coding
127. CT1135766163576626Non coding
128. GC1136553603655370Coding
129. GC1137616803761690Coding
130. GC1137749013774911Coding
131. GC1338866003886612Coding
132. CT1138916263891636Coding
133. GC1139225993922609Coding
134. AC1139590823959092Non coding
135. GC1140056814005691Coding-Non coding
136. CA1140287424028752Coding
137. TC1140331664033176Non coding
138. GC1240448794044890Coding
139. TC1340940344094046Coding
140. TC1141072614107271Non coding
141. GC1141148104114820Coding
142. GC1141444544144464Coding
143. AG1142124844212494Non coding
144. TC1342187114218723Coding
145. AG1242300464230057Coding
146. CT1142525144252524Coding
147. GC1142695564269566Coding
148. CG1142742774274287Coding
149. CT1142793734279383Coding-Non coding
150. TG1144468334446843Coding
151. GC1144545694454579Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.