CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Geitlerinema sp. PCC 7407 (NC_019703 4681112 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.21 kb   Average length of SSR  : 12.34 bp
Coding      : 3488     Non-Coding           : 359   Coding and Non-Coding : 26
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 213 58 12 19 302
IMPERFECT 0 151 2471 988 120 143 3873
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. ATCGAG181202112038Coding
2. CCAGCC187627176288Coding
3. AGCGGC179714797163Coding
4. TCGCCG24112988113011Coding
5. TCCATT18129600129617Coding
6. CGCAAG18191312191329Coding
7. TTGGGG19314483314501Coding
8. TGGTGC18405800405817Coding
9. CGTCAC24518826518849Coding
10. GACCGT18519108519125Coding
11. ACGGTG18520561520578Coding
12. TGACCG18522314522331Coding
13. ATCGTG18532836532853Coding
14. AGCCAC19534076534094Coding
15. GCGCCA18558083558100Coding
16. CGAGGG18583952583969Coding
17. GCTGAC18597734597751Coding
18. AGTCAC17601837601853Non coding
19. CTCAGT18601957601974Non coding
20. AAAATC18617163617180Coding
21. CTCGGA18620997621014Coding
22. GGTGAC18718756718773Coding
23. CCAGCC18732685732702Coding
24. GGGCAG18746399746416Coding
25. CGGTGA18778670778687Coding
26. GCGATC18798582798599Coding
27. GCGGAG18812367812384Coding
28. GTGCTG18878578878595Coding
29. CTGGCG19925331925349Coding
30. GTTGGT18957184957201Coding
31. GTTGAT1810216051021622Coding
32. GCGATC1710734311073447Non coding
33. GGGGCT1811235671123584Coding
34. CAGGGT1811244321124449Coding
35. GCTGGT1811355981135615Coding
36. CCACAG1811504031150420Coding
37. CCAGCG1811724561172473Coding
38. GCCCCT1811832591183276Coding
39. GTCATC1811918851191902Coding
40. CTTGGG1811949721194989Coding
41. CAGCGG1712723971272413Coding
42. CGTCGC1813160631316080Coding
43. ATTTTG1813301421330159Coding
44. GGCCCC1713760431376059Coding
45. CATGAC1813950421395059Coding
46. GGGCTT1914010601401078Coding-Non coding
47. GTGGCG1814139871414004Coding
48. ACCGGC1814484581448475Coding
49. GATTGG1814511201451137Coding
50. GCTGGT1914629331462951Coding
51. GCCCAG2414795251479548Coding
52. CGGTGC1814926851492702Coding
53. GGCTGA1715163771516393Coding
54. AGGCTG1715198591519875Non coding
55. TGGCGC1815997601599777Coding
56. ACATCG1816248141624831Coding
57. TCGATG1816255701625587Coding
58. GTTGGC1916278621627880Coding
59. CTGCCG1816320521632069Coding
60. TGGCTG1716569251656941Coding
61. CCGATG1716577301657746Coding
62. CGCTGC2316970631697085Coding
63. GCTGGG1816994391699456Coding
64. CCAGAG1917199251719943Coding
65. CAAAGT1818250151825032Coding
66. CTCCAG1818374161837433Coding
67. TCGTGG2418505831850606Coding
68. TCCCAG1818730591873076Coding
69. CTGAAC1819185181918535Coding
70. CAGGGC1819621551962172Coding
71. CAGGGC2420605482060571Coding
72. CAGGCC1820684692068486Coding
73. GCGGGC1820697222069739Coding
74. AATTTC1821123292112346Coding
75. TCTCTT1721912982191314Non coding
76. CCCTAC1821981822198199Coding
77. CCAGCA1822918652291882Coding
78. TCGCTG1922967632296781Coding
79. CCTGGG1823169842317001Coding
80. GCAGCG1823231212323138Coding
81. GTGAGA1823493572349374Coding
82. CCACCT1723914722391488Coding
83. ATTCAA1723977902397806Non coding
84. GCCTGG1824942392494256Coding
85. GCGGGT1824988782498895Coding
86. CGCCAC2425010802501103Coding
87. GGCTAT1725024942502510Coding
88. GCCGTG1925109932511011Coding
89. TCAGCG1925168982516916Coding
90. GCCGAG1825518962551913Coding
91. GGCCTG2425638442563867Coding
92. GAGCGG1826326182632635Coding
93. GCCCAG1926390792639097Coding
94. CTCAGC1726969222696938Coding
95. TTTTGT1927483162748334Non coding
96. ATCCCC1928266562826674Non coding
97. AGGCTC1728693502869366Coding
98. AGGCCC1828836512883668Coding
99. TTTGGG1828841142884131Coding
100. CTGCCG1829017572901774Coding
101. GCCACC2429260282926051Coding
102. GATCGC1930054133005431Coding
103. GGGCGC1930260893026107Coding
104. GCCAAT1830575133057530Coding
105. GGCGGT3631452303145265Coding
106. GCGATC1831631453163162Coding
107. CACCGC1831830493183066Coding
108. TCTGGC1731923963192412Coding
109. GCAACG1832492833249300Coding
110. GGAACA1833148973314914Coding
111. GCGATT1934770403477058Coding
112. GCGACG2434889553488978Coding
113. CGCGAT1835345073534524Coding
114. CTGCGG1835574873557504Coding
115. TCGCCC1836585203658537Coding
116. CTTGGG1837003433700360Non coding
117. CTGGTC1737495643749580Coding
118. TGGCGA1837520923752109Coding
119. GGCCCC1937911243791142Coding
120. GGCCTG1837952263795243Coding
121. CCCAGC1938702563870274Coding
122. GTCGAT1839556863955703Coding
123. CCGGTG1839878973987914Coding
124. CAGCGT1840396764039693Coding
125. CAGCCT1840579724057989Coding
126. GGGCCA1840649364064953Coding
127. GGCAGC2440698864069909Coding
128. CCGCGT1940992804099298Coding
129. CAACCT1841029784102995Coding
130. CTGCGA1941523244152342Coding
131. GCTGGC1941763974176415Coding
132. GCAAGA1842289794228996Coding
133. CCAGAG3042568134256842Coding
134. GCTGGC1843525744352591Coding
135. CAGCAC1843930734393090Coding
136. CCAGGC1844259624425979Coding
137. TGCCGC2345007404500762Coding
138. CCAGGG1945145454514563Coding
139. GCGAAT1745239974524013Coding
140. TGGCTT2445549094554932Coding
141. TGCTGA2445720944572117Coding
142. CCAGCA1845963424596359Coding
143. GCCACC1846125314612548Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.