CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Geitlerinema sp. PCC 7407 (NC_019703 4681112 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 302     Density of SSR      : 1SSR/ 15.5 kb   Average length of SSR  : 12.83 bp
Coding      : 275     Non-Coding           : 27   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 213 58 12 19 302
IMPERFECT 0 151 2471 988 120 143 3873
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTG)4121743217443Coding
2. (GAA)4123755137562Coding
3. (CCG)4123809238103Coding
4. (CTT)4124883048841Coding
5. (CCAG)3124943249443Coding
6. (TCGC)3126142261433Non coding
7. (TTTA)3126938269393Non coding
8. (TGC)4126996669977Coding
9. (GCT)412111577111588Coding
10. (CGTCGC)318112986113003Coding
11. (GCT)515130313130327Coding
12. (CTA)412212257212268Coding
13. (GTG)412219765219776Coding
14. (GCCAGC)318224283224300Coding
15. (GCG)412277206277217Coding
16. (GCCA)312285713285724Coding
17. (CTG)412290342290353Coding
18. (GCT)412296495296506Coding
19. (GCCTA)315309619309633Non coding
20. (GCT)412310801310812Coding
21. (TGC)412313221313232Coding
22. (CCA)412325061325072Coding
23. (CAG)412331023331034Coding
24. (CTGG)416350064350079Coding
25. (CAG)412353957353968Coding
26. (GGCTCT)318374033374050Coding
27. (CTG)412388345388356Coding
28. (CTG)412391628391639Coding
29. (GGGCG)315392448392462Coding
30. (CTT)412412097412108Coding
31. (GCCA)312418541418552Coding
32. (AAGG)312425608425619Coding
33. (TGGCTT)318455420455437Coding
34. (CAG)412480591480602Coding
35. (GCG)412488715488726Coding
36. (TCGC)312497189497200Non coding
37. (ATC)412514494514505Coding
38. (CAG)515517315517329Coding
39. (CGC)412517448517459Coding
40. (CGTCAC)318518826518843Coding
41. (TCACCG)318522887522904Coding
42. (GCA)412558323558334Coding
43. (GCC)515559496559510Coding
44. (TGC)412563009563020Coding
45. (ACG)412587673587684Coding
46. (GCA)412618005618016Coding
47. (GCC)412620475620486Coding
48. (GGGGC)315627159627173Coding
49. (CCA)412628716628727Coding
50. (GGC)412629446629457Coding
51. (TGC)412633823633834Coding
52. (CAG)412634115634126Coding
53. (TGG)412636278636289Coding
54. (GCA)412637567637578Coding
55. (GCC)412647634647645Coding
56. (GCC)412750557750568Coding
57. (CAG)412758127758138Coding
58. (CGC)412770161770172Coding
59. (GGC)515782943782957Coding
60. (TTGT)312786646786657Non coding
61. (CAC)412790759790770Coding
62. (TCGC)312802228802239Non coding
63. (GCT)515835467835481Coding
64. (GGT)412846505846516Coding
65. (AAG)412884138884149Non coding
66. (TGG)412907052907063Coding
67. (CGG)412915780915791Coding
68. (CAC)412942115942126Coding
69. (GAT)41210012471001258Coding
70. (CAGC)31210243051024316Coding
71. (GGT)41210308311030842Coding
72. (CGA)41210468411046852Coding
73. (CAG)41210507441050755Coding
74. (TGC)41210672321067243Coding
75. (CCGC)31210800321080043Coding
76. (CAT)41211093721109383Coding
77. (CAG)41211722891172300Coding
78. (CAG)41211734831173494Coding
79. (CCAG)31211856891185700Coding
80. (TCGC)31212078011207812Non coding
81. (ATG)41212239581223969Coding
82. (GCC)41212450391245050Coding
83. (CCA)41212496461249657Coding
84. (CAG)41212540491254060Coding
85. (GTG)41212601291260140Coding
86. (CGG)41212819861281997Coding
87. (GCG)61812885811288598Coding
88. (CAG)41212907411290752Coding
89. (TGC)51512961061296120Coding
90. (GCGATC)31813641431364160Coding
91. (CGG)41213703691370380Coding
92. (TCGC)31213809151380926Non coding
93. (GCT)41213970591397070Coding
94. (CGGG)31214038441403855Coding
95. (CGG)41214147971414808Coding
96. (CTG)51514170001417014Coding
97. (CAAA)31214257761425787Non coding
98. (GGT)41214347451434756Coding
99. (GGC)51514360561436070Coding
100. (CAG)41214422091442220Coding
101. (TCGC)31214449881444999Non coding
102. (AGC)51514452461445260Coding
103. (CTGG)31214468311446842Coding
104. (CAG)41214510971451108Coding
105. (GCTG)31214715371471548Coding
106. (GCT)51515089681508982Coding
107. (TAAA)31215275661527577Non coding
108. (CAG)41215336201533631Coding
109. (GCA)61815353261535343Coding
110. (GGCCCA)31815680291568046Coding
111. (AGC)41215916011591612Coding
112. (CAC)41216095161609527Coding
113. (GGCT)41616269421626957Coding
114. (CCG)41216318671631878Coding
115. (GCCCAA)31816667351666752Coding
116. (GCT)41216670831667094Coding
117. (AAGA)31216904001690411Coding
118. (GGGGCT)31816994361699453Coding
119. (CCAGCC)31817001401700157Coding
120. (GAGCC)31517209621720976Coding
121. (CGAA)31217232531723264Non coding
122. (GTG)41217445931744604Coding
123. (CAG)41217473051747316Coding
124. (CTG)51517941461794160Coding
125. (GCTG)31218236711823682Coding
126. (GCC)51518532771853291Coding
127. (GCC)61819116091911626Coding
128. (TCGT)31219204501920461Non coding
129. (CTGC)31219537081953719Coding
130. (CTC)41219915711991582Coding
131. (CTAT)31219999711999982Coding
132. (CTG)41220038122003823Coding
133. (GCA)41220314862031497Coding
134. (TGCT)31220451532045164Coding
135. (ACGCCA)31820619442061961Coding
136. (CAG)41220791532079164Coding
137. (GCG)41221199592119970Coding
138. (GCG)41221248712124882Coding
139. (CTG)51521248892124903Coding
140. (TGC)41221820122182023Coding
141. (ATTC)31221945412194552Non coding
142. (CTCC)31222340612234072Coding
143. (GCA)41222430732243084Coding
144. (TGT)41223079722307983Non coding
145. (GCT)41223103882310399Coding
146. (GGT)41223333892333400Coding
147. (CGCCG)31523341542334168Coding
148. (CCG)41223369972337008Coding
149. (CTGG)31223380092338020Coding
150. (GCC)41223546892354700Coding
151. (CGG)41224244452424456Coding
152. (CAG)41224426602442671Coding
153. (GTT)41224817092481720Non coding
154. (TGC)41224941612494172Coding
155. (CCG)41225028562502867Coding
156. (GGT)41225048792504890Coding
157. (GGCG)31225052822505293Coding
158. (CCG)41225123632512374Coding
159. (CGC)41225124752512486Coding
160. (TCGC)31225323892532400Coding
161. (GGCCGA)31825518952551912Coding
162. (GCGA)31226288742628885Non coding
163. (ACC)41226319332631944Coding
164. (CAG)41226412062641217Coding
165. (TTTA)31226493482649359Coding
166. (GCCA)31226935752693586Coding
167. (TGG)41227357852735796Coding
168. (GCAA)31227381262738137Coding
169. (GCT)41227527152752726Coding
170. (ACCC)31227571652757176Non coding
171. (TTCCA)42027572932757312Non coding
172. (CAG)41227816582781669Coding
173. (ACC)41227833252783336Coding
174. (GGC)41228086932808704Coding
175. (GTG)41228739082873919Coding
176. (GCA)41228757812875792Coding
177. (GGCT)31228808522880863Coding
178. (CAG)41228888292888840Coding
179. (AGCT)31228968992896910Coding
180. (CTG)41229126672912678Coding
181. (GCT)41229126962912707Coding
182. (TGC)41229318182931829Coding
183. (CCA)41229429332942944Coding
184. (GCCACC)31829489052948922Coding
185. (TTC)41229681432968154Coding
186. (GCGG)31229751022975113Coding
187. (GGC)41229845472984558Coding
188. (CAG)41230049083004919Coding
189. (CTG)41230068843006895Coding
190. (CTGA)31230257793025790Non coding
191. (GGC)41230300643030075Coding
192. (GGC)41230308243030835Coding
193. (TCA)41230334583033469Coding
194. (CCG)41230484313048442Coding
195. (GGC)41230554933055504Coding
196. (TGC)41230583343058345Coding
197. (GCA)41230851493085160Coding
198. (CAAA)31230873543087365Coding
199. (GGCT)31231010283101039Coding
200. (CCG)41231193533119364Coding
201. (GGC)41231312023131213Coding
202. (GGT)82431452033145226Coding
203. (GGTGGC)42431452393145262Coding
204. (GCT)41231837603183771Coding
205. (GGC)41231920393192050Coding
206. (GCC)41232067943206805Coding
207. (GCA)51532314333231447Coding
208. (TTC)41232372793237290Coding
209. (GCC)41232377133237724Coding
210. (GGTGT)31532419373241951Non coding
211. (CAG)41232482743248285Coding
212. (AGC)41232788173278828Coding
213. (CAGCC)31532962843296298Coding
214. (TGC)41233217863321797Coding
215. (CCG)41233513873351398Coding
216. (CTG)41233595713359582Coding
217. (GCC)41233605653360576Coding
218. (AGC)41233638153363826Coding
219. (GCA)41233735263373537Coding
220. (CAG)41233940813394092Coding
221. (GTTT)31234077903407801Coding
222. (ACG)41234812903481301Coding
223. (CGGCGA)31834889533488970Coding
224. (CAG)41235037643503775Coding
225. (CAG)51535040073504021Coding
226. (GCGA)31235187493518760Non coding
227. (GCTG)31235199123519923Coding
228. (GCCAGC)31835517483551765Coding
229. (CGG)41235703623570373Coding
230. (GCTGG)31535809163580930Coding
231. (CTCA)31235894893589500Non coding
232. (GCC)41236012453601256Coding
233. (CAG)41236123113612322Coding
234. (GCA)41236167213616732Coding
235. (GCC)41236208733620884Coding
236. (CAG)41236327143632725Coding
237. (CAC)41236534703653481Coding
238. (TGG)41236696443669655Coding
239. (GCC)41236901343690145Coding
240. (CAA)41236906793690690Coding
241. (GCA)41237023863702397Coding
242. (GAT)41237173483717359Coding
243. (AAG)41237185113718522Coding
244. (CTG)41237965943796605Coding
245. (TCAA)31238137243813735Coding
246. (CAG)41238305253830536Coding
247. (ACC)41238379063837917Coding
248. (CAG)41238477433847754Coding
249. (GCA)51538495373849551Coding
250. (TGC)41238503823850393Coding
251. (GTG)41238542583854269Coding
252. (CAG)41238580233858034Coding
253. (GCA)41238690913869102Coding
254. (GGCG)31238699843869995Coding
255. (AGC)41238791303879141Coding
256. (CGC)41238894883889499Coding
257. (TGGC)31238939883893999Coding
258. (GCG)41238991103899121Coding
259. (CAG)41239011043901115Coding
260. (CAG)41239159343915945Coding
261. (GCA)41239205923920603Coding
262. (GCCAGC)31839279273927944Coding
263. (CCAG)31239349323934943Coding
264. (GCT)41239428363942847Coding
265. (AGC)41239509993951010Coding
266. (GCG)41239756943975705Coding
267. (TGC)51539779953978009Coding
268. (GCG)41240095654009576Non coding
269. (CAG)41240434004043411Coding
270. (CGG)41240699034069914Coding
271. (CCAG)31240817504081761Coding
272. (GTG)41241232964123307Coding
273. (CCA)41241293044129315Coding
274. (CAC)41241373064137317Coding
275. (CTG)41241632674163278Coding
276. (GGC)41241695184169529Coding
277. (AGC)41241767974176808Coding
278. (TGC)41242406344240645Coding
279. (GCT)41242413224241333Coding
280. (GCT)41242453974245408Coding
281. (CCCA)31242812034281214Coding
282. (CCG)41242959494295960Coding
283. (GCGA)31243113154311326Non coding
284. (GCCGC)31543297054329719Coding
285. (CAG)41243387774338788Coding
286. (GCA)41243734314373442Coding
287. (TGGGT)31544278794427893Non coding
288. (GCGG)31244632474463258Coding
289. (ATC)41244655824465593Coding
290. (GGC)41244735534473564Coding
291. (GCT)41244843994484410Coding
292. (TGCCGC)31845007454500762Coding
293. (GGCT)31245063784506389Coding
294. (GCG)41245150944515105Coding
295. (GCG)41245171814517192Coding
296. (GCT)41245261294526140Coding
297. (GGC)41245359154535926Coding
298. (TGC)41245496884549699Coding
299. (CTG)41245843344584345Coding
300. (CCGCG)31546367184636732Coding
301. (CGC)41246429294642940Coding
302. (CGG)41246789194678930Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.