CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Geitlerinema sp. PCC 7407 (NC_019703 4681112 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.21 kb   Average length of SSR  : 12.34 bp
Coding      : 3488     Non-Coding           : 359   Coding and Non-Coding : 26
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 213 58 12 19 302
IMPERFECT 0 151 2471 988 120 143 3873
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. CAAAA1423052318Non coding
2. CTGGG15155150155164Coding
3. TGATG14159657159670Non coding
4. ATGGG16198874198889Coding
5. AGCGA14200910200923Coding
6. CTGGG14302436302449Coding
7. GGGGC16350328350343Coding
8. CCGTC15415886415900Coding
9. ACAGC14418253418266Coding
10. GCGCT15427384427398Coding
11. AGCAG14473335473348Non coding
12. GTTCA14512670512683Non coding
13. CAAAG16517827517842Non coding
14. CAGCG14557859557872Coding
15. GCAGC15663718663732Coding
16. GGCGC14677301677314Coding
17. CGCCG15682048682062Coding
18. GCTGC14682313682326Coding
19. TCGCC14739238739251Coding
20. GAGGT14805075805088Coding
21. TGCGC14895655895668Coding
22. GGCGC15896629896643Coding
23. AACGA15948558948572Non coding
24. TCTGG1410358401035853Coding
25. CGGGC1510515371051551Coding
26. GACTG1611025281102543Coding
27. GTAAA1511152711115285Non coding
28. AGCCC1411237721123785Coding
29. TTTGC1511316111131625Coding
30. ATGGG1412299721229985Non coding
31. CCCAG1612325401232555Coding
32. AGCAG1412357881235801Coding
33. CGCCA1513090851309099Coding-Non coding
34. GTGGG1513113861311400Coding
35. ATCGC1413149891315002Coding
36. GCAGC2013239431323962Coding
37. AAGGG1513533521353366Non coding
38. CCGCC1613555561355571Coding
39. CGTGG1413604361360449Coding
40. TGGTC1413716471371660Coding
41. GGTTT1513735701373584Coding
42. CCAGT1413867181386731Non coding
43. TTGCC1413928841392897Coding
44. GCCAA1614260241426039Coding
45. CCTCC1614449391444954Non coding
46. CTGGG1414465011446514Coding
47. TCAAC2014532111453230Non coding
48. GGCGC1514827751482789Coding
49. CCACG1415093541509367Coding
50. CAGCT1415472231547236Coding
51. CAGCT1615681741568189Coding
52. TTGCC1516421751642189Coding
53. CAACA1517272181727232Coding
54. GGTGC1517608471760861Coding
55. GCTGA1417677841767797Coding
56. AGCTG1418021741802187Coding
57. AGCTG1418142851814298Coding
58. GCCGC1418409231840936Non coding
59. CACTA1618593421859357Non coding
60. AGCCC1418695641869577Coding
61. GACTG1418831951883208Non coding
62. AGTCT1420452672045280Coding
63. AGCGC1421704642170477Coding
64. AGCGC1522042622204276Coding
65. CCCAG1422320982232111Coding
66. ACCAG1423107282310741Coding
67. AGAGG1523195192319533Coding
68. GTGAT1423697512369764Coding
69. GCCCA1423960962396109Coding
70. CAGCC1425795422579555Coding
71. TTAGT1526072472607261Non coding
72. TGTAG1526521732652187Non coding
73. GAATA1526535412653555Non coding
74. CGGCG1426811732681186Coding
75. AAACT1527978192797833Coding
76. TGCGC1628045092804524Coding
77. GCGAT1428253142825327Coding
78. TCCAG1429783342978347Coding
79. TCTGG1429821782982191Coding
80. CGTAG1429837882983801Coding
81. CGGCT1530205213020535Coding
82. GGACG1430251893025202Coding
83. AGGTG1430268043026817Coding
84. TTCAT1530474953047509Non coding
85. AGCCC1530481283048142Coding
86. CTGGA1430509653050978Coding
87. TGGAG1430805683080581Non coding
88. GCCAC1430829503082963Coding
89. TTGAG1431066363106649Coding
90. CCAGC1431217283121741Coding
91. CAGTT1431305923130605Coding-Non coding
92. AGCCG1531319333131947Coding
93. GCTCC1531944933194507Coding
94. CTGGG1432759893276002Coding
95. TCTAG1432839423283955Coding-Non coding
96. TTCCC1932949413294959Non coding
97. CGTGG1433823583382371Coding
98. AGCTG1435225343522547Coding
99. CCAGC2036046353604654Coding
100. AGCGC1636760733676088Coding
101. AGCCC1436929353692948Coding
102. ATCGG1437612333761246Coding
103. ACAAC1537640443764058Non coding
104. GGCAC1437754573775470Coding
105. AGCCG1538046943804708Coding
106. GACTC1438237923823805Coding
107. GCTGT2038348203834839Coding
108. AGCTC1438448193844832Coding
109. GAGCT1440732534073266Coding
110. ATGGC1442267644226777Coding
111. TGCCT1642388334238848Coding
112. CAGGG1442917874291800Coding
113. GAGCT1443051674305180Coding
114. GCTGC1443646744364687Coding
115. CAAAT1444304984430511Coding
116. ACACC1645038834503898Coding
117. GGCAC1545110954511109Coding
118. AGTGG1445352744535287Coding
119. GGGCT1545828014582815Coding
120. CATCG1445874224587435Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.