CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Geitlerinema sp. PCC 7407 (NC_019703 4681112 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 302     Density of SSR      : 1SSR/ 15.5 kb   Average length of SSR  : 12.83 bp
Coding      : 275     Non-Coding           : 27   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 213 58 12 19 302
IMPERFECT 0 151 2471 988 120 143 3873
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTG)4121743217443Coding
2. (GAA)4123755137562Coding
3. (CCG)4123809238103Coding
4. (CTT)4124883048841Coding
5. (TGC)4126996669977Coding
6. (GCT)412111577111588Coding
7. (GCT)515130313130327Coding
8. (CTA)412212257212268Coding
9. (GTG)412219765219776Coding
10. (GCG)412277206277217Coding
11. (CTG)412290342290353Coding
12. (GCT)412296495296506Coding
13. (GCT)412310801310812Coding
14. (TGC)412313221313232Coding
15. (CCA)412325061325072Coding
16. (CAG)412331023331034Coding
17. (CAG)412353957353968Coding
18. (CTG)412388345388356Coding
19. (CTG)412391628391639Coding
20. (CTT)412412097412108Coding
21. (CAG)412480591480602Coding
22. (GCG)412488715488726Coding
23. (ATC)412514494514505Coding
24. (CAG)515517315517329Coding
25. (CGC)412517448517459Coding
26. (GCA)412558323558334Coding
27. (GCC)515559496559510Coding
28. (TGC)412563009563020Coding
29. (ACG)412587673587684Coding
30. (GCA)412618005618016Coding
31. (GCC)412620475620486Coding
32. (CCA)412628716628727Coding
33. (GGC)412629446629457Coding
34. (TGC)412633823633834Coding
35. (CAG)412634115634126Coding
36. (TGG)412636278636289Coding
37. (GCA)412637567637578Coding
38. (GCC)412647634647645Coding
39. (GCC)412750557750568Coding
40. (CAG)412758127758138Coding
41. (CGC)412770161770172Coding
42. (GGC)515782943782957Coding
43. (CAC)412790759790770Coding
44. (GCT)515835467835481Coding
45. (GGT)412846505846516Coding
46. (AAG)412884138884149Non coding
47. (TGG)412907052907063Coding
48. (CGG)412915780915791Coding
49. (CAC)412942115942126Coding
50. (GAT)41210012471001258Coding
51. (GGT)41210308311030842Coding
52. (CGA)41210468411046852Coding
53. (CAG)41210507441050755Coding
54. (TGC)41210672321067243Coding
55. (CAT)41211093721109383Coding
56. (CAG)41211722891172300Coding
57. (CAG)41211734831173494Coding
58. (ATG)41212239581223969Coding
59. (GCC)41212450391245050Coding
60. (CCA)41212496461249657Coding
61. (CAG)41212540491254060Coding
62. (GTG)41212601291260140Coding
63. (CGG)41212819861281997Coding
64. (GCG)61812885811288598Coding
65. (CAG)41212907411290752Coding
66. (TGC)51512961061296120Coding
67. (CGG)41213703691370380Coding
68. (GCT)41213970591397070Coding
69. (CGG)41214147971414808Coding
70. (CTG)51514170001417014Coding
71. (GGT)41214347451434756Coding
72. (GGC)51514360561436070Coding
73. (CAG)41214422091442220Coding
74. (AGC)51514452461445260Coding
75. (CAG)41214510971451108Coding
76. (GCT)51515089681508982Coding
77. (CAG)41215336201533631Coding
78. (GCA)61815353261535343Coding
79. (AGC)41215916011591612Coding
80. (CAC)41216095161609527Coding
81. (CCG)41216318671631878Coding
82. (GCT)41216670831667094Coding
83. (GTG)41217445931744604Coding
84. (CAG)41217473051747316Coding
85. (CTG)51517941461794160Coding
86. (GCC)51518532771853291Coding
87. (GCC)61819116091911626Coding
88. (CTC)41219915711991582Coding
89. (CTG)41220038122003823Coding
90. (GCA)41220314862031497Coding
91. (CAG)41220791532079164Coding
92. (GCG)41221199592119970Coding
93. (GCG)41221248712124882Coding
94. (CTG)51521248892124903Coding
95. (TGC)41221820122182023Coding
96. (GCA)41222430732243084Coding
97. (TGT)41223079722307983Non coding
98. (GCT)41223103882310399Coding
99. (GGT)41223333892333400Coding
100. (CCG)41223369972337008Coding
101. (GCC)41223546892354700Coding
102. (CGG)41224244452424456Coding
103. (CAG)41224426602442671Coding
104. (GTT)41224817092481720Non coding
105. (TGC)41224941612494172Coding
106. (CCG)41225028562502867Coding
107. (GGT)41225048792504890Coding
108. (CCG)41225123632512374Coding
109. (CGC)41225124752512486Coding
110. (ACC)41226319332631944Coding
111. (CAG)41226412062641217Coding
112. (TGG)41227357852735796Coding
113. (GCT)41227527152752726Coding
114. (CAG)41227816582781669Coding
115. (ACC)41227833252783336Coding
116. (GGC)41228086932808704Coding
117. (GTG)41228739082873919Coding
118. (GCA)41228757812875792Coding
119. (CAG)41228888292888840Coding
120. (CTG)41229126672912678Coding
121. (GCT)41229126962912707Coding
122. (TGC)41229318182931829Coding
123. (CCA)41229429332942944Coding
124. (TTC)41229681432968154Coding
125. (GGC)41229845472984558Coding
126. (CAG)41230049083004919Coding
127. (CTG)41230068843006895Coding
128. (GGC)41230300643030075Coding
129. (GGC)41230308243030835Coding
130. (TCA)41230334583033469Coding
131. (CCG)41230484313048442Coding
132. (GGC)41230554933055504Coding
133. (TGC)41230583343058345Coding
134. (GCA)41230851493085160Coding
135. (CCG)41231193533119364Coding
136. (GGC)41231312023131213Coding
137. (GGT)82431452033145226Coding
138. (GCT)41231837603183771Coding
139. (GGC)41231920393192050Coding
140. (GCC)41232067943206805Coding
141. (GCA)51532314333231447Coding
142. (TTC)41232372793237290Coding
143. (GCC)41232377133237724Coding
144. (CAG)41232482743248285Coding
145. (AGC)41232788173278828Coding
146. (TGC)41233217863321797Coding
147. (CCG)41233513873351398Coding
148. (CTG)41233595713359582Coding
149. (GCC)41233605653360576Coding
150. (AGC)41233638153363826Coding
151. (GCA)41233735263373537Coding
152. (CAG)41233940813394092Coding
153. (ACG)41234812903481301Coding
154. (CAG)41235037643503775Coding
155. (CAG)51535040073504021Coding
156. (CGG)41235703623570373Coding
157. (GCC)41236012453601256Coding
158. (CAG)41236123113612322Coding
159. (GCA)41236167213616732Coding
160. (GCC)41236208733620884Coding
161. (CAG)41236327143632725Coding
162. (CAC)41236534703653481Coding
163. (TGG)41236696443669655Coding
164. (GCC)41236901343690145Coding
165. (CAA)41236906793690690Coding
166. (GCA)41237023863702397Coding
167. (GAT)41237173483717359Coding
168. (AAG)41237185113718522Coding
169. (CTG)41237965943796605Coding
170. (CAG)41238305253830536Coding
171. (ACC)41238379063837917Coding
172. (CAG)41238477433847754Coding
173. (GCA)51538495373849551Coding
174. (TGC)41238503823850393Coding
175. (GTG)41238542583854269Coding
176. (CAG)41238580233858034Coding
177. (GCA)41238690913869102Coding
178. (AGC)41238791303879141Coding
179. (CGC)41238894883889499Coding
180. (GCG)41238991103899121Coding
181. (CAG)41239011043901115Coding
182. (CAG)41239159343915945Coding
183. (GCA)41239205923920603Coding
184. (GCT)41239428363942847Coding
185. (AGC)41239509993951010Coding
186. (GCG)41239756943975705Coding
187. (TGC)51539779953978009Coding
188. (GCG)41240095654009576Non coding
189. (CAG)41240434004043411Coding
190. (CGG)41240699034069914Coding
191. (GTG)41241232964123307Coding
192. (CCA)41241293044129315Coding
193. (CAC)41241373064137317Coding
194. (CTG)41241632674163278Coding
195. (GGC)41241695184169529Coding
196. (AGC)41241767974176808Coding
197. (TGC)41242406344240645Coding
198. (GCT)41242413224241333Coding
199. (GCT)41242453974245408Coding
200. (CCG)41242959494295960Coding
201. (CAG)41243387774338788Coding
202. (GCA)41243734314373442Coding
203. (ATC)41244655824465593Coding
204. (GGC)41244735534473564Coding
205. (GCT)41244843994484410Coding
206. (GCG)41245150944515105Coding
207. (GCG)41245171814517192Coding
208. (GCT)41245261294526140Coding
209. (GGC)41245359154535926Coding
210. (TGC)41245496884549699Coding
211. (CTG)41245843344584345Coding
212. (CGC)41246429294642940Coding
213. (CGG)41246789194678930Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.