CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Geitlerinema sp. PCC 7407 (NC_019703 4681112 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 302     Density of SSR      : 1SSR/ 15.5 kb   Average length of SSR  : 12.83 bp
Coding      : 275     Non-Coding           : 27   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 213 58 12 19 302
IMPERFECT 0 151 2471 988 120 143 3873
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCAG)3124943249443Coding
2. (TCGC)3126142261433Non coding
3. (TTTA)3126938269393Non coding
4. (GCCA)312285713285724Coding
5. (CTGG)416350064350079Coding
6. (GCCA)312418541418552Coding
7. (AAGG)312425608425619Coding
8. (TCGC)312497189497200Non coding
9. (TTGT)312786646786657Non coding
10. (TCGC)312802228802239Non coding
11. (CAGC)31210243051024316Coding
12. (CCGC)31210800321080043Coding
13. (CCAG)31211856891185700Coding
14. (TCGC)31212078011207812Non coding
15. (TCGC)31213809151380926Non coding
16. (CGGG)31214038441403855Coding
17. (CAAA)31214257761425787Non coding
18. (TCGC)31214449881444999Non coding
19. (CTGG)31214468311446842Coding
20. (GCTG)31214715371471548Coding
21. (TAAA)31215275661527577Non coding
22. (GGCT)41616269421626957Coding
23. (AAGA)31216904001690411Coding
24. (CGAA)31217232531723264Non coding
25. (GCTG)31218236711823682Coding
26. (TCGT)31219204501920461Non coding
27. (CTGC)31219537081953719Coding
28. (CTAT)31219999711999982Coding
29. (TGCT)31220451532045164Coding
30. (ATTC)31221945412194552Non coding
31. (CTCC)31222340612234072Coding
32. (CTGG)31223380092338020Coding
33. (GGCG)31225052822505293Coding
34. (TCGC)31225323892532400Coding
35. (GCGA)31226288742628885Non coding
36. (TTTA)31226493482649359Coding
37. (GCCA)31226935752693586Coding
38. (GCAA)31227381262738137Coding
39. (ACCC)31227571652757176Non coding
40. (GGCT)31228808522880863Coding
41. (AGCT)31228968992896910Coding
42. (GCGG)31229751022975113Coding
43. (CTGA)31230257793025790Non coding
44. (CAAA)31230873543087365Coding
45. (GGCT)31231010283101039Coding
46. (GTTT)31234077903407801Coding
47. (GCGA)31235187493518760Non coding
48. (GCTG)31235199123519923Coding
49. (CTCA)31235894893589500Non coding
50. (TCAA)31238137243813735Coding
51. (GGCG)31238699843869995Coding
52. (TGGC)31238939883893999Coding
53. (CCAG)31239349323934943Coding
54. (CCAG)31240817504081761Coding
55. (CCCA)31242812034281214Coding
56. (GCGA)31243113154311326Non coding
57. (GCGG)31244632474463258Coding
58. (GGCT)31245063784506389Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.