CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter sp. JS (NC_022600 4724792 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 360     Density of SSR      : 1SSR/ 13.12 kb   Average length of SSR  : 13.05 bp
Coding      : 336     Non-Coding           : 23   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 195 108 20 36 360
IMPERFECT 0 110 2773 1317 157 196 4553
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAGCGG)3182338723404Coding
2. (GCCCAG)3182389723914Coding
3. (TGTCGC)318299558299575Coding
4. (CAACGG)318327188327205Coding
5. (CCACCG)318818171818188Coding
6. (GCGCGA)318879947879964Coding
7. (GCAGCG)318930272930289Coding
8. (CCCCGC)318944753944770Coding
9. (CGCCCT)318974656974673Coding
10. (GGGGCT)31814315001431517Coding
11. (TCGCCC)31814805421480559Coding
12. (GCCCGA)31815355761535593Coding
13. (CAGCCC)42419874811987504Coding
14. (GCACCA)31821668602166877Coding
15. (CCCAAG)31822121272212144Coding
16. (GTCGTG)31822406382240655Coding
17. (GACGAG)42423150222315045Coding
18. (CTGGGC)31823476712347688Coding
19. (AACGGC)31824645552464572Coding
20. (CTCGCC)31825033682503385Coding
21. (AGTGAA)42425575192557542Non coding
22. (ACCACG)42427112482711271Coding
23. (GCGCTC)31828674992867516Coding
24. (CACCAG)31830795063079523Coding
25. (GCAGTG)31832436853243702Coding
26. (CGCCTC)31837416233741640Coding
27. (CGGCTC)31838495483849565Coding
28. (CGGCAA)31838497533849770Coding
29. (CTCGCG)31840476134047630Coding
30. (GCAGCG)31841288314128848Coding
31. (GCAGGT)31841780074178024Coding
32. (CCACCG)31841962984196315Coding
33. (GCACCG)31842230744223091Coding
34. (GGCACC)31842604224260439Coding
35. (CCAGGC)31845879594587976Coding
36. (ATGTCG)31846260084626025Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.