CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter sp. JS (NC_022600 4724792 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 360     Density of SSR      : 1SSR/ 13.12 kb   Average length of SSR  : 13.05 bp
Coding      : 336     Non-Coding           : 23   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 195 108 20 36 360
IMPERFECT 0 110 2773 1317 157 196 4553
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGC)41233243335Coding
2. (CAGCGG)3182338723404Coding
3. (GCCCAG)3182389723914Coding
4. (CCG)4124704347054Coding
5. (CGG)4124873348744Coding
6. (GCG)4126277062781Coding
7. (CCCG)3126686366874Coding
8. (CGCT)3127729977310Coding
9. (GGC)4128183581846Coding
10. (GCT)4128793287943Coding
11. (CGCT)3129170391714Coding
12. (CGGA)3129681996830Coding
13. (CG)612118853118864Coding
14. (CGA)412123991124002Coding
15. (GCGG)312128971128982Coding
16. (CGA)412171695171706Coding
17. (CTT)412196803196814Coding
18. (GCCA)312203633203644Coding
19. (GCC)515206940206954Coding
20. (GCCA)312212778212789Coding
21. (TCGC)312218873218884Coding
22. (CTG)412227591227602Coding
23. (TGCG)312237999238010Non coding
24. (CCG)412256397256408Coding
25. (TGTCGC)318299558299575Coding
26. (CAACGG)318327188327205Coding
27. (GGC)412371338371349Coding
28. (GCG)412392831392842Coding
29. (ACCAG)315401043401057Coding
30. (GCCA)312452835452846Coding
31. (GGT)412490805490816Coding
32. (CGC)412499110499121Coding
33. (AAG)412500108500119Coding
34. (GCT)412502221502232Coding
35. (ATCG)312530525530536Coding
36. (GATC)312548026548037Coding
37. (CGGA)312555284555295Coding
38. (CAG)412566343566354Coding
39. (GCG)412566709566720Coding
40. (GGC)412591253591264Coding
41. (ACC)515606423606437Coding
42. (GCC)412651443651454Coding
43. (CGCT)312707085707096Coding
44. (GCC)412717495717506Coding
45. (GCC)412722529722540Coding
46. (CGC)412729347729358Coding
47. (CGC)412731379731390Coding
48. (GCGG)312746092746103Coding
49. (CGG)412759380759391Coding
50. (GCCCG)315782322782336Coding
51. (CTGAA)315782865782879Coding
52. (CCA)515795109795123Coding
53. (CGAC)312798050798061Coding
54. (GCCT)312799286799297Coding
55. (TCGA)312804271804282Coding
56. (CCG)515805983805997Coding
57. (CAGC)312815615815626Coding
58. (CCACCG)318818171818188Coding
59. (GCC)412856219856230Coding
60. (GCA)412859556859567Coding
61. (GCGCGA)318879947879964Coding
62. (GCG)412880793880804Coding
63. (GCC)412912549912560Coding
64. (TAAG)312918109918120Non coding
65. (CGC)515918655918669Non coding
66. (GCC)412924606924617Coding
67. (CCG)412925704925715Coding
68. (GGC)412926285926296Coding
69. (GGC)412926407926418Coding
70. (GCAGCG)318930272930289Coding
71. (GGC)412936760936771Coding
72. (GGC)618944091944108Coding
73. (CCCCGC)318944753944770Coding
74. (TGCGC)315963468963482Non coding
75. (GGGC)312964280964291Non coding
76. (ACGG)312970380970391Coding
77. (CGCCCT)318974656974673Coding
78. (GCT)515988765988779Coding
79. (CGGG)31210175221017533Coding
80. (CGC)41210209011020912Coding
81. (CATC)31210213781021389Coding
82. (GGT)41210395681039579Coding
83. (CAGG)31210439631043974Coding
84. (CGG)41210526941052705Coding
85. (GGC)41210535951053606Coding
86. (CGG)41210640261064037Coding
87. (TCGA)31210911531091164Coding
88. (GCCC)31210928641092875Coding
89. (CCCG)31210932031093214Coding
90. (GCCGG)31511286971128711Coding
91. (GCC)41211296201129631Coding
92. (GCC)41211311011131112Coding
93. (GTC)41211345861134597Coding
94. (GAGCT)31511365341136548Coding
95. (CCCCG)31511592041159218Coding
96. (CGA)41212009901201001Coding
97. (TCG)51512205171220531Coding
98. (CTG)41212241501224161Coding
99. (GGC)41212283821228393Coding
100. (GCAC)31212454871245498Coding
101. (TCAGC)31512545421254556Coding
102. (CCTG)31212905771290588Non coding
103. (TAG)41212919561291967Non coding
104. (GCCC)31213328811332892Coding
105. (GGCG)31213411271341138Coding
106. (CTG)51513427171342731Coding
107. (GGC)41213566091356620Coding
108. (CTG)41213619171361928Coding
109. (GGCT)31213685911368602Coding
110. (GCC)41213704631370474Coding
111. (CGCT)31213744421374453Coding
112. (GCC)51513912891391303Coding
113. (CGA)41214251401425151Coding
114. (CTG)41214255311425542Coding
115. (CCG)41214281831428194Coding
116. (GGGGCT)31814315001431517Coding
117. (GAC)41214377331437744Coding
118. (CCG)41214694761469487Coding
119. (TCGCCC)31814805421480559Coding
120. (ACTG)41614853411485356Coding
121. (GCC)61815355331535550Coding
122. (GCCCGA)31815355761535593Coding
123. (GAG)51515359011535915Coding
124. (CCAA)31215523391552350Coding
125. (CGCCC)31515712531571267Coding
126. (AGCC)31215886841588695Coding
127. (AGCC)31215906751590686Coding
128. (GCA)41215931291593140Coding
129. (CCG)41216144121614423Coding
130. (TGT)41216210871621098Coding
131. (CGGG)31216293071629318Coding
132. (GGC)41216300251630036Coding
133. (GAGC)31216495211649532Coding
134. (GGC)41216553341655345Coding
135. (ACA)41216601541660165Coding
136. (TCG)41216696321669643Coding
137. (ACG)41216736571673668Coding
138. (CGC)41216817821681793Coding
139. (GGC)41216943311694342Coding
140. (GCTG)31217035561703567Coding
141. (CGCC)31217228401722851Coding
142. (AGGC)31217293721729383Coding
143. (GTA)41218081131808124Coding
144. (TCG)41218123831812394Coding
145. (CGCC)31218188081818819Coding
146. (TCG)41218363421836353Coding
147. (CTG)41218575031857514Coding
148. (CAGC)31218852151885226Coding
149. (GTT)41218872431887254Coding
150. (GCCC)31218901731890184Coding
151. (GGTG)31218985091898520Coding
152. (CCAG)31219006961900707Coding
153. (CGGG)31219268101926821Coding
154. (CGA)41219323271932338Coding
155. (TCT)41219331951933206Coding
156. (CGC)41219344031934414Coding
157. (GTA)41219455071945518Coding
158. (TGG)41219600571960068Coding
159. (CAGCCC)42419874811987504Coding
160. (CGG)41219901831990194Coding
161. (GGC)41219917601991771Coding
162. (GGC)51519930601993074Coding
163. (CCTG)31220098072009818Non coding
164. (GCC)41220292132029224Coding
165. (GGCT)31220322082032219Coding
166. (GCG)41220345312034542Coding
167. (GGCG)31220529162052927Coding
168. (TGCC)31220602862060297Coding
169. (GTG)41220793882079399Coding
170. (GTC)41220805662080577Coding
171. (CCGT)31221610412161052Coding
172. (AGGC)31221629342162945Coding
173. (GCACCA)31821668602166877Coding
174. (GCG)41221723282172339Coding
175. (GCCC)31221965022196513Non coding
176. (CCCAAG)31822121272212144Coding
177. (GTCGTG)31822406382240655Coding
178. (AGC)51522717042271718Coding
179. (CTG)41222876572287668Coding
180. (TCTT)31222901722290183Non coding
181. (CTGA)31223130062313017Non coding
182. (CGA)41223149972315008Coding
183. (GACGAG)42423150222315045Coding
184. (GCG)41223317302331741Coding
185. (CAG)41223417942341805Coding
186. (CCG)41223419432341954Coding
187. (CTGGGC)31823476712347688Coding
188. (CGG)41223504632350474Coding
189. (TGC)41223526632352674Coding
190. (CCAG)31223849132384924Coding
191. (CGG)41223914442391455Coding
192. (CCG)41224081612408172Coding
193. (GAA)41224270782427089Coding
194. (GAA)41224291222429133Coding
195. (GCG)41224402222440233Coding
196. (AGCC)31224440892444100Coding
197. (TCG)41224556932455704Coding
198. (AACGGC)31824645552464572Coding
199. (GCGCG)31524940542494068Coding
200. (GCC)41224977742497785Coding
201. (ACG)41225022612502272Coding
202. (CTCGCC)31825033682503385Coding
203. (GCAG)31225427582542769Non coding
204. (AGTGAA)42425575192557542Non coding
205. (CGA)41225638592563870Coding
206. (CCCG)31225765082576519Coding
207. (CGA)41225770012577012Coding
208. (CTG)41226272592627270Coding
209. (CCGCG)31526363412636355Coding
210. (CGAT)31226542772654288Coding
211. (CTG)41226598872659898Coding
212. (GCCCG)31526851332685147Non coding
213. (CGA)41226900532690064Coding
214. (TGCC)31227046762704687Coding
215. (CCGC)31227089052708916Coding
216. (ACCACG)42427112482711271Coding
217. (CGC)41227141522714163Coding
218. (CTGC)31227142352714246Coding
219. (CAC)41227164132716424Coding
220. (GGC)41227341572734168Coding
221. (CGC)41227510042751015Coding
222. (GCGG)31227584192758430Non coding
223. (GCAG)31227661632766174Coding
224. (GCCA)31227755102775521Coding
225. (GTGCG)31527974632797477Coding
226. (CCCG)31227979012797912Coding
227. (CGA)41228071492807160Coding
228. (CCG)41228266062826617Coding
229. (CCGCC)31528308552830869Coding
230. (GCGCTC)31828674992867516Coding
231. (CGG)41228872102887221Coding
232. (GCC)41228964482896459Coding
233. (CGGGG)31528981062898120Coding
234. (CAT)41229138842913895Coding
235. (CAA)41229172162917227Coding
236. (GGC)41229389732938984Coding
237. (GCA)41229401922940203Coding
238. (CGCT)31229561382956149Coding
239. (GCTC)41629697532969768Coding
240. (CGCCC)31529807992980813Coding
241. (AGCAA)31530150333015047Coding
242. (GCTG)31230157613015772Coding
243. (TGCC)31230216353021646Coding
244. (GAT)41230470213047032Coding
245. (CCG)51530581143058128Coding
246. (CCG)41230598063059817Coding
247. (CGGGC)31530734053073419Coding
248. (GCG)41230791653079176Coding
249. (CACCAG)31830795063079523Coding
250. (CCG)41231268463126857Coding
251. (CGCC)31231366293136640Coding
252. (GTC)41231564493156460Coding
253. (CGT)41231572163157227Coding
254. (AGT)41231799573179968Coding
255. (GGCG)31231882053188216Coding
256. (GCTG)31231955323195543Coding
257. (GCAGTG)31832436853243702Coding
258. (GGGA)31232509793250990Non coding
259. (AGCC)31232556793255690Coding
260. (CGA)41232643553264366Coding
261. (CGGG)31232670633267074Coding
262. (CGG)41232703763270387Coding
263. (GCC)51533000433300057Coding
264. (GCT)41233204743320485Coding
265. (GGC)41233458333345844Non coding
266. (GCTG)31233726093372620Coding
267. (GGCG)31233745683374579Coding
268. (CCGCC)31533862143386228Coding
269. (CGC)51534006203400634Coding
270. (GGCA)31234371283437139Coding
271. (TCG)41234571703457181Coding
272. (GGGT)31234822213482232Non coding
273. (GTC)41234972843497295Coding
274. (CCG)41234998793499890Coding
275. (GCGG)31235353233535334Coding
276. (ACC)41235389173538928Non coding
277. (ACC)41235422943542305Coding
278. (CGG)41235439863543997Coding
279. (GCCA)31235498413549852Coding
280. (CGC)41235673383567349Coding
281. (GCCA)31235753623575373Non coding
282. (CGC)41235820313582042Coding
283. (TGCC)31235914343591445Coding
284. (TCG)41236055273605538Non coding
285. (GCCC)31236238273623838Coding
286. (GGCG)31237312463731257Coding
287. (CGCCTC)31837416233741640Coding
288. (ACCG)31237481533748164Coding
289. (CGA)41237488553748866Coding
290. (GGC)41237568643756875Coding
291. (CCCGG)31537630673763081Coding
292. (CCG)41237783173778328Coding
293. (CGC)51537996153799629Coding
294. (GGCA)31238314743831485Non coding
295. (GCC)41238425443842555Coding
296. (CGGCTC)31838495483849565Coding
297. (CGGCAA)31838497533849770Coding
298. (CAGC)31238499103849921Coding
299. (TCGG)31238963233896334Coding
300. (CAG)41239046913904702Coding
301. (CCTG)31239413983941409Coding
302. (GCG)41239432883943299Coding
303. (CAGC)31239474853947496Coding
304. (CGG)41239598563959867Coding
305. (TGC)41239672913967302Coding
306. (CGG)41239928363992847Coding
307. (CTGG)31239984823998493Coding
308. (CTCGCG)31840476134047630Coding
309. (CAC)41240591434059154Coding
310. (GCC)51540784044078418Coding
311. (TTC)41240910264091037Coding
312. (TGA)41240917344091745Coding
313. (CCG)51541154304115444Coding
314. (GCAGCG)31841288314128848Coding
315. (GGCA)31241548584154869Coding
316. (CTA)41241752774175288Coding-Non coding
317. (GCAGGT)31841780074178024Coding
318. (CGA)41241829364182947Coding
319. (CGG)41241874454187456Coding
320. (CCACCG)31841962984196315Coding
321. (CTG)41242025544202565Coding
322. (GCACCG)31842230744223091Coding
323. (TGG)41242304014230412Coding
324. (CAG)41242318014231812Coding
325. (CGGG)31242559254255936Coding
326. (CTG)51542576934257707Coding
327. (CTT)41242579204257931Coding
328. (GGC)41242582824258293Coding
329. (CGG)41242583434258354Coding
330. (GGCACC)31842604224260439Coding
331. (CAG)41242684814268492Coding
332. (CGA)41242891384289149Coding
333. (CGC)41242897594289770Coding
334. (CGG)41243098684309879Coding
335. (GGC)41243216114321622Coding
336. (GTC)41243310314331042Coding
337. (CCAG)31243577114357722Coding
338. (CTG)41243995894399600Coding
339. (CGA)41244086634408674Coding
340. (GCTG)31244474964447507Coding
341. (GGCT)31244502304450241Coding
342. (CCAG)31244705214470532Coding
343. (CGA)41244764834476494Coding
344. (CGA)41244821334482144Coding
345. (TTTG)31245002054500216Non coding
346. (GCGG)31245041704504181Coding
347. (GGC)41245064324506443Coding
348. (GTC)41245547694554780Coding
349. (GCT)41245677714567782Coding
350. (CCAGGC)31845879594587976Coding
351. (GGCT)31245926114592622Coding
352. (ATGTCG)31846260084626025Coding
353. (CAG)41246393814639392Coding
354. (CGG)41246480714648082Coding
355. (CGC)41246551674655178Coding
356. (GGGC)31246853464685357Coding
357. (CGG)41246857284685739Coding
358. (GCC)41246871794687190Coding
359. (GGCG)31247102854710296Coding
360. (AGT)41247103964710407Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.