CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter sp. JS (NC_022600 4724792 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 360     Density of SSR      : 1SSR/ 13.12 kb   Average length of SSR  : 13.05 bp
Coding      : 336     Non-Coding           : 23   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 195 108 20 36 360
IMPERFECT 0 110 2773 1317 157 196 4553
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGC)41233243335Coding
2. (CCG)4124704347054Coding
3. (CGG)4124873348744Coding
4. (GCG)4126277062781Coding
5. (GGC)4128183581846Coding
6. (GCT)4128793287943Coding
7. (CGA)412123991124002Coding
8. (CGA)412171695171706Coding
9. (CTT)412196803196814Coding
10. (GCC)515206940206954Coding
11. (CTG)412227591227602Coding
12. (CCG)412256397256408Coding
13. (GGC)412371338371349Coding
14. (GCG)412392831392842Coding
15. (GGT)412490805490816Coding
16. (CGC)412499110499121Coding
17. (AAG)412500108500119Coding
18. (GCT)412502221502232Coding
19. (CAG)412566343566354Coding
20. (GCG)412566709566720Coding
21. (GGC)412591253591264Coding
22. (ACC)515606423606437Coding
23. (GCC)412651443651454Coding
24. (GCC)412717495717506Coding
25. (GCC)412722529722540Coding
26. (CGC)412729347729358Coding
27. (CGC)412731379731390Coding
28. (CGG)412759380759391Coding
29. (CCA)515795109795123Coding
30. (CCG)515805983805997Coding
31. (GCC)412856219856230Coding
32. (GCA)412859556859567Coding
33. (GCG)412880793880804Coding
34. (GCC)412912549912560Coding
35. (CGC)515918655918669Non coding
36. (GCC)412924606924617Coding
37. (CCG)412925704925715Coding
38. (GGC)412926285926296Coding
39. (GGC)412926407926418Coding
40. (GGC)412936760936771Coding
41. (GGC)618944091944108Coding
42. (GCT)515988765988779Coding
43. (CGC)41210209011020912Coding
44. (GGT)41210395681039579Coding
45. (CGG)41210526941052705Coding
46. (GGC)41210535951053606Coding
47. (CGG)41210640261064037Coding
48. (GCC)41211296201129631Coding
49. (GCC)41211311011131112Coding
50. (GTC)41211345861134597Coding
51. (CGA)41212009901201001Coding
52. (TCG)51512205171220531Coding
53. (CTG)41212241501224161Coding
54. (GGC)41212283821228393Coding
55. (TAG)41212919561291967Non coding
56. (CTG)51513427171342731Coding
57. (GGC)41213566091356620Coding
58. (CTG)41213619171361928Coding
59. (GCC)41213704631370474Coding
60. (GCC)51513912891391303Coding
61. (CGA)41214251401425151Coding
62. (CTG)41214255311425542Coding
63. (CCG)41214281831428194Coding
64. (GAC)41214377331437744Coding
65. (CCG)41214694761469487Coding
66. (GCC)61815355331535550Coding
67. (GAG)51515359011535915Coding
68. (GCA)41215931291593140Coding
69. (CCG)41216144121614423Coding
70. (TGT)41216210871621098Coding
71. (GGC)41216300251630036Coding
72. (GGC)41216553341655345Coding
73. (ACA)41216601541660165Coding
74. (TCG)41216696321669643Coding
75. (ACG)41216736571673668Coding
76. (CGC)41216817821681793Coding
77. (GGC)41216943311694342Coding
78. (GTA)41218081131808124Coding
79. (TCG)41218123831812394Coding
80. (TCG)41218363421836353Coding
81. (CTG)41218575031857514Coding
82. (GTT)41218872431887254Coding
83. (CGA)41219323271932338Coding
84. (TCT)41219331951933206Coding
85. (CGC)41219344031934414Coding
86. (GTA)41219455071945518Coding
87. (TGG)41219600571960068Coding
88. (CGG)41219901831990194Coding
89. (GGC)41219917601991771Coding
90. (GGC)51519930601993074Coding
91. (GCC)41220292132029224Coding
92. (GCG)41220345312034542Coding
93. (GTG)41220793882079399Coding
94. (GTC)41220805662080577Coding
95. (GCG)41221723282172339Coding
96. (AGC)51522717042271718Coding
97. (CTG)41222876572287668Coding
98. (CGA)41223149972315008Coding
99. (GCG)41223317302331741Coding
100. (CAG)41223417942341805Coding
101. (CCG)41223419432341954Coding
102. (CGG)41223504632350474Coding
103. (TGC)41223526632352674Coding
104. (CGG)41223914442391455Coding
105. (CCG)41224081612408172Coding
106. (GAA)41224270782427089Coding
107. (GAA)41224291222429133Coding
108. (GCG)41224402222440233Coding
109. (TCG)41224556932455704Coding
110. (GCC)41224977742497785Coding
111. (ACG)41225022612502272Coding
112. (CGA)41225638592563870Coding
113. (CGA)41225770012577012Coding
114. (CTG)41226272592627270Coding
115. (CTG)41226598872659898Coding
116. (CGA)41226900532690064Coding
117. (CGC)41227141522714163Coding
118. (CAC)41227164132716424Coding
119. (GGC)41227341572734168Coding
120. (CGC)41227510042751015Coding
121. (CGA)41228071492807160Coding
122. (CCG)41228266062826617Coding
123. (CGG)41228872102887221Coding
124. (GCC)41228964482896459Coding
125. (CAT)41229138842913895Coding
126. (CAA)41229172162917227Coding
127. (GGC)41229389732938984Coding
128. (GCA)41229401922940203Coding
129. (GAT)41230470213047032Coding
130. (CCG)51530581143058128Coding
131. (CCG)41230598063059817Coding
132. (GCG)41230791653079176Coding
133. (CCG)41231268463126857Coding
134. (GTC)41231564493156460Coding
135. (CGT)41231572163157227Coding
136. (AGT)41231799573179968Coding
137. (CGA)41232643553264366Coding
138. (CGG)41232703763270387Coding
139. (GCC)51533000433300057Coding
140. (GCT)41233204743320485Coding
141. (GGC)41233458333345844Non coding
142. (CGC)51534006203400634Coding
143. (TCG)41234571703457181Coding
144. (GTC)41234972843497295Coding
145. (CCG)41234998793499890Coding
146. (ACC)41235389173538928Non coding
147. (ACC)41235422943542305Coding
148. (CGG)41235439863543997Coding
149. (CGC)41235673383567349Coding
150. (CGC)41235820313582042Coding
151. (TCG)41236055273605538Non coding
152. (CGA)41237488553748866Coding
153. (GGC)41237568643756875Coding
154. (CCG)41237783173778328Coding
155. (CGC)51537996153799629Coding
156. (GCC)41238425443842555Coding
157. (CAG)41239046913904702Coding
158. (GCG)41239432883943299Coding
159. (CGG)41239598563959867Coding
160. (TGC)41239672913967302Coding
161. (CGG)41239928363992847Coding
162. (CAC)41240591434059154Coding
163. (GCC)51540784044078418Coding
164. (TTC)41240910264091037Coding
165. (TGA)41240917344091745Coding
166. (CCG)51541154304115444Coding
167. (CTA)41241752774175288Coding-Non coding
168. (CGA)41241829364182947Coding
169. (CGG)41241874454187456Coding
170. (CTG)41242025544202565Coding
171. (TGG)41242304014230412Coding
172. (CAG)41242318014231812Coding
173. (CTG)51542576934257707Coding
174. (CTT)41242579204257931Coding
175. (GGC)41242582824258293Coding
176. (CGG)41242583434258354Coding
177. (CAG)41242684814268492Coding
178. (CGA)41242891384289149Coding
179. (CGC)41242897594289770Coding
180. (CGG)41243098684309879Coding
181. (GGC)41243216114321622Coding
182. (GTC)41243310314331042Coding
183. (CTG)41243995894399600Coding
184. (CGA)41244086634408674Coding
185. (CGA)41244764834476494Coding
186. (CGA)41244821334482144Coding
187. (GGC)41245064324506443Coding
188. (GTC)41245547694554780Coding
189. (GCT)41245677714567782Coding
190. (CAG)41246393814639392Coding
191. (CGG)41246480714648082Coding
192. (CGC)41246551674655178Coding
193. (CGG)41246857284685739Coding
194. (GCC)41246871794687190Coding
195. (AGT)41247103964710407Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.