CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter sp. JS (NC_022600 4724792 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 360     Density of SSR      : 1SSR/ 13.12 kb   Average length of SSR  : 13.05 bp
Coding      : 336     Non-Coding           : 23   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 195 108 20 36 360
IMPERFECT 0 110 2773 1317 157 196 4553
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCCG)3126686366874Coding
2. (CGCT)3127729977310Coding
3. (CGCT)3129170391714Coding
4. (CGGA)3129681996830Coding
5. (GCGG)312128971128982Coding
6. (GCCA)312203633203644Coding
7. (GCCA)312212778212789Coding
8. (TCGC)312218873218884Coding
9. (TGCG)312237999238010Non coding
10. (GCCA)312452835452846Coding
11. (ATCG)312530525530536Coding
12. (GATC)312548026548037Coding
13. (CGGA)312555284555295Coding
14. (CGCT)312707085707096Coding
15. (GCGG)312746092746103Coding
16. (CGAC)312798050798061Coding
17. (GCCT)312799286799297Coding
18. (TCGA)312804271804282Coding
19. (CAGC)312815615815626Coding
20. (TAAG)312918109918120Non coding
21. (GGGC)312964280964291Non coding
22. (ACGG)312970380970391Coding
23. (CGGG)31210175221017533Coding
24. (CATC)31210213781021389Coding
25. (CAGG)31210439631043974Coding
26. (TCGA)31210911531091164Coding
27. (GCCC)31210928641092875Coding
28. (CCCG)31210932031093214Coding
29. (GCAC)31212454871245498Coding
30. (CCTG)31212905771290588Non coding
31. (GCCC)31213328811332892Coding
32. (GGCG)31213411271341138Coding
33. (GGCT)31213685911368602Coding
34. (CGCT)31213744421374453Coding
35. (ACTG)41614853411485356Coding
36. (CCAA)31215523391552350Coding
37. (AGCC)31215886841588695Coding
38. (AGCC)31215906751590686Coding
39. (CGGG)31216293071629318Coding
40. (GAGC)31216495211649532Coding
41. (GCTG)31217035561703567Coding
42. (CGCC)31217228401722851Coding
43. (AGGC)31217293721729383Coding
44. (CGCC)31218188081818819Coding
45. (CAGC)31218852151885226Coding
46. (GCCC)31218901731890184Coding
47. (GGTG)31218985091898520Coding
48. (CCAG)31219006961900707Coding
49. (CGGG)31219268101926821Coding
50. (CCTG)31220098072009818Non coding
51. (GGCT)31220322082032219Coding
52. (GGCG)31220529162052927Coding
53. (TGCC)31220602862060297Coding
54. (CCGT)31221610412161052Coding
55. (AGGC)31221629342162945Coding
56. (GCCC)31221965022196513Non coding
57. (TCTT)31222901722290183Non coding
58. (CTGA)31223130062313017Non coding
59. (CCAG)31223849132384924Coding
60. (AGCC)31224440892444100Coding
61. (GCAG)31225427582542769Non coding
62. (CCCG)31225765082576519Coding
63. (CGAT)31226542772654288Coding
64. (TGCC)31227046762704687Coding
65. (CCGC)31227089052708916Coding
66. (CTGC)31227142352714246Coding
67. (GCGG)31227584192758430Non coding
68. (GCAG)31227661632766174Coding
69. (GCCA)31227755102775521Coding
70. (CCCG)31227979012797912Coding
71. (CGCT)31229561382956149Coding
72. (GCTC)41629697532969768Coding
73. (GCTG)31230157613015772Coding
74. (TGCC)31230216353021646Coding
75. (CGCC)31231366293136640Coding
76. (GGCG)31231882053188216Coding
77. (GCTG)31231955323195543Coding
78. (GGGA)31232509793250990Non coding
79. (AGCC)31232556793255690Coding
80. (CGGG)31232670633267074Coding
81. (GCTG)31233726093372620Coding
82. (GGCG)31233745683374579Coding
83. (GGCA)31234371283437139Coding
84. (GGGT)31234822213482232Non coding
85. (GCGG)31235353233535334Coding
86. (GCCA)31235498413549852Coding
87. (GCCA)31235753623575373Non coding
88. (TGCC)31235914343591445Coding
89. (GCCC)31236238273623838Coding
90. (GGCG)31237312463731257Coding
91. (ACCG)31237481533748164Coding
92. (GGCA)31238314743831485Non coding
93. (CAGC)31238499103849921Coding
94. (TCGG)31238963233896334Coding
95. (CCTG)31239413983941409Coding
96. (CAGC)31239474853947496Coding
97. (CTGG)31239984823998493Coding
98. (GGCA)31241548584154869Coding
99. (CGGG)31242559254255936Coding
100. (CCAG)31243577114357722Coding
101. (GCTG)31244474964447507Coding
102. (GGCT)31244502304450241Coding
103. (CCAG)31244705214470532Coding
104. (TTTG)31245002054500216Non coding
105. (GCGG)31245041704504181Coding
106. (GGCT)31245926114592622Coding
107. (GGGC)31246853464685357Coding
108. (GGCG)31247102854710296Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.