CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter violaceus PCC 7421 (NC_005125 4659020 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 507     Density of SSR      : 1SSR/ 9.17 kb   Average length of SSR  : 12.78 bp
Coding      : 476     Non-Coding           : 28   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 7 346 123 13 18 507
IMPERFECT 2 266 3187 1345 149 167 5116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCG)41213821393Coding
2. (CGG)51562966310Coding
3. (GCCG)3122318923200Coding
4. (CCG)4123281032821Coding
5. (GCC)4123797737988Coding
6. (CGG)4124004540056Non coding
7. (CCA)4125184751858Coding
8. (CGC)4125779057801Coding
9. (GCGG)3126220462215Coding
10. (GGC)4126309463105Coding
11. (CGG)4126684366854Coding
12. (CGG)4126749167502Coding
13. (CGG)4127094570956Coding
14. (CGG)4127145171462Coding
15. (GCC)4128951689527Coding
16. (GCC)4129042990440Non coding
17. (CGGT)3129926499275Coding
18. (CCG)515103570103584Coding
19. (GTC)412107666107677Coding
20. (CGG)515121304121318Coding
21. (TAC)412124063124074Coding
22. (GCC)618131356131373Coding
23. (CCG)412132020132031Coding
24. (GCC)412133444133455Coding
25. (GCCG)312135556135567Coding
26. (GCG)412136131136142Coding
27. (GGCC)312136401136412Coding
28. (GGCCG)315164759164773Coding
29. (GGGT)312165389165400Coding
30. (GGC)412185992186003Non coding
31. (CGC)412233072233083Coding
32. (CCG)412252206252217Coding
33. (CGG)412253899253910Coding
34. (GCC)412256913256924Coding
35. (CAGGGC)318262278262295Coding
36. (GCG)412275619275630Coding
37. (TGC)412292221292232Coding
38. (GGC)412299603299614Coding
39. (GGC)412300179300190Coding
40. (CG)612300929300940Coding
41. (GCC)412307178307189Coding
42. (GCG)412308172308183Coding
43. (ATCC)312316048316059Coding
44. (CCGC)312339566339577Non coding
45. (GCG)412350397350408Coding
46. (CCTG)312361853361864Coding
47. (CCCG)312363849363860Coding
48. (GCG)412394643394654Coding
49. (GCC)412420656420667Coding
50. (CCG)412426177426188Coding
51. (GGC)412431093431104Non coding
52. (TGC)412434464434475Coding
53. (GTC)412437677437688Coding
54. (CGGG)312446340446351Coding
55. (CCG)412449251449262Coding
56. (CCG)412449266449277Coding
57. (CCG)412449281449292Coding
58. (TCT)515449533449547Coding
59. (CCG)412458853458864Coding
60. (CGC)412468557468568Coding
61. (GCC)412470320470331Coding
62. (CGG)412493121493132Coding
63. (TCCA)312494421494432Coding
64. (CGG)412519027519038Coding
65. (CGG)412524219524230Coding
66. (CCA)412530292530303Coding
67. (TGC)412552591552602Coding
68. (TGG)412554352554363Coding
69. (CCCGG)315561658561672Coding
70. (GCG)412563543563554Coding
71. (CGG)412564753564764Coding
72. (GGC)412566405566416Coding
73. (GC)612578148578159Coding
74. (CGCC)312579770579781Coding
75. (GCG)412586936586947Coding
76. (ACTT)312599211599222Coding
77. (GCCC)312623181623192Coding
78. (CAG)412631915631926Coding
79. (GC)612641189641200Coding
80. (GGC)412660748660759Coding
81. (CAGG)312662038662049Coding
82. (CGC)412667197667208Coding
83. (CGG)412675833675844Coding
84. (CAG)412703838703849Coding
85. (TG)612711873711884Coding
86. (GGC)412713557713568Coding
87. (GGC)412723137723148Coding
88. (GGC)412724435724446Coding
89. (CGC)412727996728007Coding
90. (CCGG)312740896740907Coding
91. (CGAGGG)318746428746445Coding
92. (GCC)412758491758502Coding
93. (GGC)412762856762867Coding
94. (GGT)412763835763846Coding
95. (GGC)412773519773530Coding
96. (CGC)412793180793191Coding
97. (GGC)515832636832650Coding
98. (AAC)412851380851391Coding
99. (GAC)515853928853942Coding
100. (CCG)412868000868011Coding
101. (CGG)412870099870110Coding
102. (GGC)618876289876306Coding
103. (GCC)412880473880484Coding
104. (CGC)515889712889726Coding
105. (CAC)412895629895640Coding
106. (GGC)412905456905467Coding
107. (CGGG)312914179914190Coding
108. (GGCG)312918572918583Coding
109. (CGCC)312933256933267Coding
110. (CGA)412933751933762Coding
111. (GGGT)312938979938990Coding
112. (CGG)412967796967807Coding
113. (CTG)412974646974657Coding
114. (CGGG)312980285980296Coding
115. (CGA)412989858989869Coding
116. (CCGG)312994747994758Coding
117. (CCG)412999240999251Non coding
118. (AAAT)31210050201005031Coding
119. (CCG)41210225121022523Coding
120. (GCC)41210257301025741Coding
121. (CAC)41210678871067898Coding
122. (CGG)41210745581074569Coding
123. (GCT)41210752851075296Coding
124. (GCC)51510770631077077Coding
125. (GCC)41210811641081175Coding
126. (GGCC)31210827851082796Coding
127. (GGC)51510854251085439Coding
128. (CGAGCG)31810899551089972Coding
129. (TCGG)31211023241102335Coding
130. (CGCC)31211051061105117Coding
131. (CCG)41211291371129148Coding
132. (CAC)41211464471146458Coding
133. (CGA)41211469441146955Coding
134. (CGC)41211528501152861Coding
135. (GGC)41211563731156384Coding
136. (CGCCCG)31811678671167884Coding
137. (TCGCG)31511870361187050Coding
138. (CCGG)31211931111193122Coding
139. (CAC)41212206871220698Coding
140. (CGCTG)31512248321224846Coding
141. (CGG)41212292291229240Coding
142. (TCGG)31212361511236162Coding
143. (GTCGAG)31812392921239309Coding
144. (CAGCC)31512481061248120Coding
145. (GGCG)31212546651254676Coding
146. (CCCG)31212572381257249Coding
147. (GCTT)31212644651264476Non coding
148. (GGC)41212731031273114Coding
149. (CCA)41212840081284019Coding
150. (GGC)41212867381286749Coding
151. (CCG)41212887161288727Coding
152. (GGCC)31212950221295033Coding
153. (GGCC)31213108761310887Coding
154. (CGAG)31213138381313849Coding
155. (ACC)41213140561314067Coding
156. (GCC)41213324791332490Coding
157. (GTCG)31213330831333094Coding
158. (GGT)41213557001355711Coding
159. (GCA)41213631071363118Coding
160. (TATT)31213888231388834Coding
161. (GGC)92713960081396034Coding
162. (GCG)41213962731396284Coding
163. (CGG)51513967151396729Coding
164. (CGG)72113969611396981Coding
165. (GCGG)31214085661408577Coding
166. (GCCC)31214170711417082Coding
167. (GCT)41214238961423907Coding
168. (GCC)41214645381464549Coding
169. (CGC)41214925311492542Coding
170. (CCG)51514925481492562Coding
171. (CCG)51514943541494368Coding
172. (CTG)41214960421496053Coding
173. (GCGG)31214999691499980Coding
174. (CGG)41215037551503766Coding
175. (GCG)41215063451506356Coding
176. (GCCG)31215202581520269Non coding
177. (GGC)41215561361556147Coding
178. (GCTT)31215727931572804Non coding
179. (GCG)41215914641591475Coding
180. (TTTG)31215961471596158Coding
181. (GGC)41216105511610562Coding
182. (CCG)41216137901613801Coding
183. (CGA)41216206761620687Coding
184. (CAT)41216212731621284Coding
185. (CCG)41216217591621770Coding
186. (CGC)72116221711622191Coding
187. (CCCG)31216256471625658Coding
188. (GGT)41216277591627770Coding
189. (GCCG)41616359361635951Coding
190. (CCG)41216492731649284Coding
191. (GCG)41216645161664527Coding
192. (AGC)41216660261666037Coding
193. (ACG)51516751071675121Coding
194. (TTGC)31216945711694582Coding
195. (CCG)41217183311718342Coding
196. (CGT)41217363901736401Coding
197. (CGGG)31217397261739737Coding
198. (CGAC)31217427831742794Coding
199. (GGC)51517436931743707Coding
200. (AGCC)31217567191756730Coding
201. (CTT)41217582621758273Coding
202. (GCCC)31217590731759084Coding
203. (GGC)41217757601775771Coding
204. (CGG)41217771801777191Coding
205. (GTG)41217875181787529Coding
206. (TCGC)31217920231792034Coding
207. (CGC)41218219421821953Coding
208. (CGC)51518440451844059Coding
209. (TCGG)31218776521877663Coding
210. (TTG)41218833591883370Non coding
211. (GCG)41218908521890863Coding
212. (CAC)41218917911891802Coding
213. (AGC)41219097811909792Coding
214. (CAGCAA)31819136791913696Coding
215. (CGGC)31219141891914200Coding
216. (GCG)41219169721916983Coding
217. (CGG)51519275571927571Coding
218. (GCGA)31219420121942023Coding
219. (GCCACC)31819485031948520Coding
220. (TGG)51519523371952351Coding
221. (GGC)41219683621968373Coding
222. (GGC)41219768191976830Coding
223. (CCGC)31219975531997564Coding
224. (CGG)41219998271999838Coding
225. (CGC)41220076822007693Coding
226. (GCC)41220416852041696Coding
227. (GCC)51520733442073358Coding
228. (GGC)41220742412074252Coding
229. (TGA)41220805312080542Coding
230. (GGC)41220903452090356Coding
231. (TCCATC)31820971022097119Coding
232. (TGC)41220975462097557Coding
233. (CCGC)41620984742098489Coding
234. (CTG)41221030242103035Coding
235. (CAG)41221070502107061Coding
236. (GGC)41221172412117252Coding
237. (CGG)41221307282130739Coding
238. (GGC)41221343782134389Coding
239. (CGC)41221374222137433Coding
240. (TTGA)31221391152139126Non coding
241. (CGA)41221483182148329Coding
242. (CGGGTA)31821488972148914Coding
243. (CGT)41221550702155081Coding
244. (ATC)41221753962175407Coding
245. (CGG)41221767412176752Coding
246. (GGC)41221784952178506Coding
247. (GGT)41221811202181131Coding
248. (CCG)51521977292197743Coding
249. (GGC)41222175102217521Coding
250. (GCG)51522344682234482Coding
251. (CAG)51522362702236284Coding
252. (GCCG)31222422062242217Coding
253. (CGC)41222463612246372Coding
254. (GGAA)31222603112260322Coding
255. (CGGG)31222643702264381Coding
256. (GGCA)31222730302273041Coding
257. (CTGC)31222831622283173Coding
258. (GCCGTG)31823117822311799Coding
259. (CGC)51523154422315456Coding
260. (GCA)41223375052337516Coding
261. (GCA)41223463462346357Coding
262. (GCA)41223514832351494Coding
263. (CGG)41223616982361709Coding
264. (GCC)41223656742365685Non coding
265. (GCG)41223742432374254Coding
266. (GGCA)31223798472379858Coding
267. (CGC)61823930842393101Coding
268. (TGG)41224032762403287Coding
269. (GCT)41224187532418764Coding
270. (CCGCC)42024280272428046Coding
271. (GGC)41224396302439641Coding
272. (GGCG)31224512742451285Non coding
273. (GGC)51524580812458095Coding
274. (CCCG)31224734532473464Coding
275. (CCG)41224798692479880Coding
276. (GGC)51524870662487080Coding
277. (CTC)41224877512487762Non coding
278. (GCC)61824918132491830Coding
279. (GCC)51524952542495268Coding
280. (GGCG)31224989492498960Coding
281. (CCAC)31225060122506023Coding
282. (CCG)61825078722507889Coding
283. (GCC)41225107492510760Coding
284. (CAC)41225116422511653Coding
285. (CCGC)31225164722516483Coding
286. (GCC)41225194812519492Coding
287. (TGC)41225462042546215Coding
288. (GTT)51525514052551419Coding
289. (CCGCG)31525562652556279Coding
290. (CTG)41225611402561151Coding
291. (CGC)41225631902563201Coding
292. (CCG)51525632072563221Coding
293. (CCG)41225654442565455Coding
294. (CTG)41225815662581577Coding
295. (GGC)41225932962593307Coding
296. (GGC)41225967042596715Coding
297. (GCC)41226025592602570Coding
298. (GGC)51526173202617334Coding
299. (TCCA)31226250452625056Non coding
300. (GCG)41226337882633799Coding
301. (CGG)41226367542636765Coding
302. (GGGC)31226408182640829Coding
303. (CCGA)31226561752656186Coding
304. (GCC)41226654412665452Coding
305. (GGC)41226793492679360Coding-Non coding
306. (CGC)41226804652680476Coding
307. (CCGCCA)42426851412685164Coding
308. (CCG)51526851952685209Coding
309. (CCG)41226931212693132Coding
310. (CCG)41226953072695318Coding
311. (GGC)51526965852696599Coding
312. (GGC)41226996222699633Coding
313. (CGCC)31227088002708811Coding
314. (GCAG)31227108332710844Coding
315. (GCAG)31227160432716054Non coding
316. (GCG)41227211432721154Non coding
317. (GCC)41227228002722811Coding
318. (GCC)41227259492725960Coding
319. (GAT)41227319692731980Coding
320. (CCG)41227364302736441Coding
321. (CCG)61827543892754406Coding
322. (CGG)41227552952755306Coding
323. (GCC)41227660112766022Coding
324. (CCG)41227762342776245Coding
325. (CTGC)31227830032783014Coding
326. (CGGG)31227884162788427Coding
327. (GCCCG)31527889852788999Coding
328. (GCC)41227911492791160Coding
329. (GCC)41227951722795183Coding
330. (GGC)51528061892806203Coding
331. (CGG)41228140642814075Coding
332. (CCG)41228272812827292Coding
333. (GCTCT)31528437512843765Coding
334. (GCC)41228514712851482Coding
335. (CTG)41229087872908798Coding
336. (CTGG)41629121812912196Coding
337. (CGGC)31229221312922142Coding
338. (CTGC)31229313682931379Coding
339. (CGG)41229314872931498Coding
340. (GGC)41229363212936332Coding
341. (GCGG)31229374962937507Non coding
342. (GGCA)31229716092971620Coding
343. (GCT)41229765762976587Coding
344. (CCGC)31229797452979756Coding
345. (TGGGT)31529893092989323Coding
346. (CCG)41230051013005112Coding
347. (GGC)51530077373007751Coding
348. (CGG)41230116203011631Coding
349. (AGGC)31230121943012205Coding
350. (CAG)41230182563018267Coding
351. (CCG)41230404223040433Non coding
352. (GCA)41230467193046730Non coding
353. (GGC)41230791143079125Coding
354. (GGC)41230795263079537Coding
355. (GTCC)31230883923088403Non coding
356. (CCG)41231044873104498Coding
357. (CGC)41231259423125953Coding
358. (GGC)41231401933140204Coding
359. (CGA)41231440003144011Coding
360. (ACG)41231440203144031Coding
361. (AAG)41231659533165964Coding
362. (GCC)41231731503173161Coding
363. (CAGG)31231928933192904Non coding
364. (CCAG)31231954683195479Coding
365. (GCCC)41632111403211155Coding
366. (CGTG)31232194883219499Coding
367. (CAG)41232252233225234Coding
368. (CCG)41232290363229047Coding-Non coding
369. (GCCC)31232366323236643Coding
370. (GC)61232452223245233Coding
371. (CGC)41232507923250803Coding
372. (CCG)41232559103255921Coding
373. (GCG)41232591403259151Coding
374. (TGC)41232615163261527Coding
375. (CGC)41232645183264529Coding
376. (GGCA)31233024803302491Coding
377. (ATCGCC)31833084903308507Coding
378. (CGG)41233124283312439Coding
379. (GC)61233284333328444Coding
380. (GCC)41233287153328726Coding
381. (GGC)41233301853330196Coding
382. (CGA)41233373653337376Coding
383. (CACCAG)31833454343345451Coding
384. (CCG)51533489973349011Coding
385. (TGC)41233729963373007Coding
386. (GCC)41233843613384372Coding
387. (GGGC)31233851213385132Coding
388. (GCC)41233900613390072Coding
389. (GCC)41234035023403513Coding
390. (CCGG)31234149203414931Coding
391. (CGGC)31234150293415040Coding
392. (CCG)41234380703438081Coding
393. (CTA)41234388983438909Non coding
394. (GCG)41234472563447267Coding
395. (CGA)41234650143465025Coding
396. (GGCG)31234745943474605Coding
397. (GCG)41234755273475538Coding
398. (GGC)41234782103478221Coding
399. (GGCG)31234800733480084Coding
400. (GGC)41234817133481724Coding
401. (CCCG)31234820833482094Coding
402. (GGC)41234844623484473Coding
403. (ACC)41234845833484594Coding
404. (CAG)51534919963492010Coding
405. (CGC)41234946093494620Coding
406. (CAC)41235032173503228Coding
407. (GCC)41235050603505071Coding
408. (AGCC)31235099053509916Coding
409. (CGCC)31235138953513906Coding
410. (CCGTCG)31835178733517890Coding
411. (TGC)41235346113534622Coding
412. (GCG)41235396653539676Coding
413. (GTG)41235443303544341Coding
414. (GCC)41235453733545384Coding
415. (CCACCG)31835523953552412Coding
416. (CCGC)31235950233595034Coding
417. (ACGC)31236000483600059Coding
418. (CGA)41236104803610491Coding
419. (CGG)41236108383610849Coding
420. (GGC)41236209583620969Coding
421. (GCGG)31236287683628779Coding
422. (CCGG)31236294903629501Coding
423. (CGG)41236369793636990Coding
424. (AGCC)31236578343657845Coding
425. (CGC)41236596593659670Coding
426. (CGC)41236672963667307Coding
427. (CGG)41236732913673302Coding
428. (GGC)41236824553682466Coding
429. (CCG)41236904993690510Coding
430. (GCT)41236936573693668Coding
431. (CCGC)31237026083702619Coding
432. (GGC)41237136533713664Coding
433. (GGCGG)31537137913713805Coding
434. (GCA)51537166333716647Coding
435. (CGA)41237332423733253Coding
436. (ATGG)31237659173765928Coding-Non coding
437. (GCG)41237662283766239Coding
438. (CG)61237664903766501Coding
439. (CGG)41237742643774275Coding
440. (CCG)41237764603776471Coding
441. (GCA)41237769423776953Coding
442. (GGCG)31238171233817134Coding
443. (GCG)51538204583820472Coding
444. (CCG)41238466723846683Coding
445. (GCCG)31238807243880735Coding
446. (GCC)41238857413885752Coding
447. (GGC)41238924463892457Coding
448. (TGG)41238935193893530Coding
449. (TTC)41239051483905159Coding
450. (CCGG)31239185563918567Coding
451. (GACGG)31539243773924391Coding
452. (CAGCCC)31839371453937162Coding
453. (GCC)41239405033940514Coding
454. (GGC)41239422593942270Non coding
455. (GGC)41239446133944624Coding
456. (CGCC)31239475923947603Coding
457. (CCGC)31239510153951026Coding
458. (GGC)51539698763969890Coding
459. (CCA)41239825743982585Coding
460. (GCGG)31239849073984918Coding
461. (GCCG)31240098914009902Coding
462. (CTG)41240261944026205Coding
463. (GCC)41240280484028059Coding
464. (CACC)41640293914029406Non coding
465. (CGC)41240322684032279Coding
466. (CGC)41240490334049044Coding
467. (ACG)41240496324049643Coding
468. (CGC)41240512844051295Coding
469. (GGTGGC)31840758034075820Coding
470. (CGC)41241118074111818Coding
471. (CGG)41241188574118868Non coding
472. (GCGA)31241703654170376Coding
473. (GGC)41241872634187274Coding
474. (GCG)51541898324189846Coding
475. (TGG)41241946124194623Coding
476. (CGG)51541952154195229Coding
477. (GGC)41242048544204865Coding
478. (AAT)41242067134206724Coding
479. (ACCC)31242108474210858Coding
480. (GCCC)31242364994236510Coding
481. (GCC)41243061044306115Coding
482. (CGG)41243168424316853Coding
483. (CGATGC)31843237714323788Coding
484. (CCGG)31243298714329882Coding
485. (GAA)51543389914339005Coding
486. (TGC)41243577594357770Coding
487. (CTTAA)31543614814361495Non coding
488. (AGC)41243915124391523Coding
489. (CCCG)31244412264441237Coding
490. (CGG)41244437404443751Coding
491. (GCGG)31244589834458994Coding
492. (GGT)41244605184460529Coding
493. (CGC)51544701894470203Coding
494. (GCA)41244763154476326Coding
495. (CGG)41244844194484430Non coding
496. (GGC)41244963294496340Coding
497. (CAC)41245082154508226Coding
498. (CCGG)31245154014515412Coding
499. (AAAC)31245314344531445Coding
500. (GCC)51545407854540799Coding
501. (TAC)41245447804544791Coding
502. (GCG)41245496874549698Coding
503. (TGG)41245612494561260Coding
504. (CGG)41245623014562312Coding
505. (CACC)31245877924587803Coding-Non coding
506. (CAC)41246025484602559Coding
507. (GCCC)31246260704626081Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.