CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter violaceus PCC 7421 (NC_005125 4659020 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 507     Density of SSR      : 1SSR/ 9.17 kb   Average length of SSR  : 12.78 bp
Coding      : 476     Non-Coding           : 28   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 7 346 123 13 18 507
IMPERFECT 2 266 3187 1345 149 167 5116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCG)41213821393Coding
2. (CGG)51562966310Coding
3. (CCG)4123281032821Coding
4. (GCC)4123797737988Coding
5. (CGG)4124004540056Non coding
6. (CCA)4125184751858Coding
7. (CGC)4125779057801Coding
8. (GGC)4126309463105Coding
9. (CGG)4126684366854Coding
10. (CGG)4126749167502Coding
11. (CGG)4127094570956Coding
12. (CGG)4127145171462Coding
13. (GCC)4128951689527Coding
14. (GCC)4129042990440Non coding
15. (CCG)515103570103584Coding
16. (GTC)412107666107677Coding
17. (CGG)515121304121318Coding
18. (TAC)412124063124074Coding
19. (GCC)618131356131373Coding
20. (CCG)412132020132031Coding
21. (GCC)412133444133455Coding
22. (GCG)412136131136142Coding
23. (GGC)412185992186003Non coding
24. (CGC)412233072233083Coding
25. (CCG)412252206252217Coding
26. (CGG)412253899253910Coding
27. (GCC)412256913256924Coding
28. (GCG)412275619275630Coding
29. (TGC)412292221292232Coding
30. (GGC)412299603299614Coding
31. (GGC)412300179300190Coding
32. (GCC)412307178307189Coding
33. (GCG)412308172308183Coding
34. (GCG)412350397350408Coding
35. (GCG)412394643394654Coding
36. (GCC)412420656420667Coding
37. (CCG)412426177426188Coding
38. (GGC)412431093431104Non coding
39. (TGC)412434464434475Coding
40. (GTC)412437677437688Coding
41. (CCG)412449251449262Coding
42. (CCG)412449266449277Coding
43. (CCG)412449281449292Coding
44. (TCT)515449533449547Coding
45. (CCG)412458853458864Coding
46. (CGC)412468557468568Coding
47. (GCC)412470320470331Coding
48. (CGG)412493121493132Coding
49. (CGG)412519027519038Coding
50. (CGG)412524219524230Coding
51. (CCA)412530292530303Coding
52. (TGC)412552591552602Coding
53. (TGG)412554352554363Coding
54. (GCG)412563543563554Coding
55. (CGG)412564753564764Coding
56. (GGC)412566405566416Coding
57. (GCG)412586936586947Coding
58. (CAG)412631915631926Coding
59. (GGC)412660748660759Coding
60. (CGC)412667197667208Coding
61. (CGG)412675833675844Coding
62. (CAG)412703838703849Coding
63. (GGC)412713557713568Coding
64. (GGC)412723137723148Coding
65. (GGC)412724435724446Coding
66. (CGC)412727996728007Coding
67. (GCC)412758491758502Coding
68. (GGC)412762856762867Coding
69. (GGT)412763835763846Coding
70. (GGC)412773519773530Coding
71. (CGC)412793180793191Coding
72. (GGC)515832636832650Coding
73. (AAC)412851380851391Coding
74. (GAC)515853928853942Coding
75. (CCG)412868000868011Coding
76. (CGG)412870099870110Coding
77. (GGC)618876289876306Coding
78. (GCC)412880473880484Coding
79. (CGC)515889712889726Coding
80. (CAC)412895629895640Coding
81. (GGC)412905456905467Coding
82. (CGA)412933751933762Coding
83. (CGG)412967796967807Coding
84. (CTG)412974646974657Coding
85. (CGA)412989858989869Coding
86. (CCG)412999240999251Non coding
87. (CCG)41210225121022523Coding
88. (GCC)41210257301025741Coding
89. (CAC)41210678871067898Coding
90. (CGG)41210745581074569Coding
91. (GCT)41210752851075296Coding
92. (GCC)51510770631077077Coding
93. (GCC)41210811641081175Coding
94. (GGC)51510854251085439Coding
95. (CCG)41211291371129148Coding
96. (CAC)41211464471146458Coding
97. (CGA)41211469441146955Coding
98. (CGC)41211528501152861Coding
99. (GGC)41211563731156384Coding
100. (CAC)41212206871220698Coding
101. (CGG)41212292291229240Coding
102. (GGC)41212731031273114Coding
103. (CCA)41212840081284019Coding
104. (GGC)41212867381286749Coding
105. (CCG)41212887161288727Coding
106. (ACC)41213140561314067Coding
107. (GCC)41213324791332490Coding
108. (GGT)41213557001355711Coding
109. (GCA)41213631071363118Coding
110. (GGC)92713960081396034Coding
111. (GCG)41213962731396284Coding
112. (CGG)51513967151396729Coding
113. (CGG)72113969611396981Coding
114. (GCT)41214238961423907Coding
115. (GCC)41214645381464549Coding
116. (CGC)41214925311492542Coding
117. (CCG)51514925481492562Coding
118. (CCG)51514943541494368Coding
119. (CTG)41214960421496053Coding
120. (CGG)41215037551503766Coding
121. (GCG)41215063451506356Coding
122. (GGC)41215561361556147Coding
123. (GCG)41215914641591475Coding
124. (GGC)41216105511610562Coding
125. (CCG)41216137901613801Coding
126. (CGA)41216206761620687Coding
127. (CAT)41216212731621284Coding
128. (CCG)41216217591621770Coding
129. (CGC)72116221711622191Coding
130. (GGT)41216277591627770Coding
131. (CCG)41216492731649284Coding
132. (GCG)41216645161664527Coding
133. (AGC)41216660261666037Coding
134. (ACG)51516751071675121Coding
135. (CCG)41217183311718342Coding
136. (CGT)41217363901736401Coding
137. (GGC)51517436931743707Coding
138. (CTT)41217582621758273Coding
139. (GGC)41217757601775771Coding
140. (CGG)41217771801777191Coding
141. (GTG)41217875181787529Coding
142. (CGC)41218219421821953Coding
143. (CGC)51518440451844059Coding
144. (TTG)41218833591883370Non coding
145. (GCG)41218908521890863Coding
146. (CAC)41218917911891802Coding
147. (AGC)41219097811909792Coding
148. (GCG)41219169721916983Coding
149. (CGG)51519275571927571Coding
150. (TGG)51519523371952351Coding
151. (GGC)41219683621968373Coding
152. (GGC)41219768191976830Coding
153. (CGG)41219998271999838Coding
154. (CGC)41220076822007693Coding
155. (GCC)41220416852041696Coding
156. (GCC)51520733442073358Coding
157. (GGC)41220742412074252Coding
158. (TGA)41220805312080542Coding
159. (GGC)41220903452090356Coding
160. (TGC)41220975462097557Coding
161. (CTG)41221030242103035Coding
162. (CAG)41221070502107061Coding
163. (GGC)41221172412117252Coding
164. (CGG)41221307282130739Coding
165. (GGC)41221343782134389Coding
166. (CGC)41221374222137433Coding
167. (CGA)41221483182148329Coding
168. (CGT)41221550702155081Coding
169. (ATC)41221753962175407Coding
170. (CGG)41221767412176752Coding
171. (GGC)41221784952178506Coding
172. (GGT)41221811202181131Coding
173. (CCG)51521977292197743Coding
174. (GGC)41222175102217521Coding
175. (GCG)51522344682234482Coding
176. (CAG)51522362702236284Coding
177. (CGC)41222463612246372Coding
178. (CGC)51523154422315456Coding
179. (GCA)41223375052337516Coding
180. (GCA)41223463462346357Coding
181. (GCA)41223514832351494Coding
182. (CGG)41223616982361709Coding
183. (GCC)41223656742365685Non coding
184. (GCG)41223742432374254Coding
185. (CGC)61823930842393101Coding
186. (TGG)41224032762403287Coding
187. (GCT)41224187532418764Coding
188. (GGC)41224396302439641Coding
189. (GGC)51524580812458095Coding
190. (CCG)41224798692479880Coding
191. (GGC)51524870662487080Coding
192. (CTC)41224877512487762Non coding
193. (GCC)61824918132491830Coding
194. (GCC)51524952542495268Coding
195. (CCG)61825078722507889Coding
196. (GCC)41225107492510760Coding
197. (CAC)41225116422511653Coding
198. (GCC)41225194812519492Coding
199. (TGC)41225462042546215Coding
200. (GTT)51525514052551419Coding
201. (CTG)41225611402561151Coding
202. (CGC)41225631902563201Coding
203. (CCG)51525632072563221Coding
204. (CCG)41225654442565455Coding
205. (CTG)41225815662581577Coding
206. (GGC)41225932962593307Coding
207. (GGC)41225967042596715Coding
208. (GCC)41226025592602570Coding
209. (GGC)51526173202617334Coding
210. (GCG)41226337882633799Coding
211. (CGG)41226367542636765Coding
212. (GCC)41226654412665452Coding
213. (GGC)41226793492679360Coding-Non coding
214. (CGC)41226804652680476Coding
215. (CCG)51526851952685209Coding
216. (CCG)41226931212693132Coding
217. (CCG)41226953072695318Coding
218. (GGC)51526965852696599Coding
219. (GGC)41226996222699633Coding
220. (GCG)41227211432721154Non coding
221. (GCC)41227228002722811Coding
222. (GCC)41227259492725960Coding
223. (GAT)41227319692731980Coding
224. (CCG)41227364302736441Coding
225. (CCG)61827543892754406Coding
226. (CGG)41227552952755306Coding
227. (GCC)41227660112766022Coding
228. (CCG)41227762342776245Coding
229. (GCC)41227911492791160Coding
230. (GCC)41227951722795183Coding
231. (GGC)51528061892806203Coding
232. (CGG)41228140642814075Coding
233. (CCG)41228272812827292Coding
234. (GCC)41228514712851482Coding
235. (CTG)41229087872908798Coding
236. (CGG)41229314872931498Coding
237. (GGC)41229363212936332Coding
238. (GCT)41229765762976587Coding
239. (CCG)41230051013005112Coding
240. (GGC)51530077373007751Coding
241. (CGG)41230116203011631Coding
242. (CAG)41230182563018267Coding
243. (CCG)41230404223040433Non coding
244. (GCA)41230467193046730Non coding
245. (GGC)41230791143079125Coding
246. (GGC)41230795263079537Coding
247. (CCG)41231044873104498Coding
248. (CGC)41231259423125953Coding
249. (GGC)41231401933140204Coding
250. (CGA)41231440003144011Coding
251. (ACG)41231440203144031Coding
252. (AAG)41231659533165964Coding
253. (GCC)41231731503173161Coding
254. (CAG)41232252233225234Coding
255. (CCG)41232290363229047Coding-Non coding
256. (CGC)41232507923250803Coding
257. (CCG)41232559103255921Coding
258. (GCG)41232591403259151Coding
259. (TGC)41232615163261527Coding
260. (CGC)41232645183264529Coding
261. (CGG)41233124283312439Coding
262. (GCC)41233287153328726Coding
263. (GGC)41233301853330196Coding
264. (CGA)41233373653337376Coding
265. (CCG)51533489973349011Coding
266. (TGC)41233729963373007Coding
267. (GCC)41233843613384372Coding
268. (GCC)41233900613390072Coding
269. (GCC)41234035023403513Coding
270. (CCG)41234380703438081Coding
271. (CTA)41234388983438909Non coding
272. (GCG)41234472563447267Coding
273. (CGA)41234650143465025Coding
274. (GCG)41234755273475538Coding
275. (GGC)41234782103478221Coding
276. (GGC)41234817133481724Coding
277. (GGC)41234844623484473Coding
278. (ACC)41234845833484594Coding
279. (CAG)51534919963492010Coding
280. (CGC)41234946093494620Coding
281. (CAC)41235032173503228Coding
282. (GCC)41235050603505071Coding
283. (TGC)41235346113534622Coding
284. (GCG)41235396653539676Coding
285. (GTG)41235443303544341Coding
286. (GCC)41235453733545384Coding
287. (CGA)41236104803610491Coding
288. (CGG)41236108383610849Coding
289. (GGC)41236209583620969Coding
290. (CGG)41236369793636990Coding
291. (CGC)41236596593659670Coding
292. (CGC)41236672963667307Coding
293. (CGG)41236732913673302Coding
294. (GGC)41236824553682466Coding
295. (CCG)41236904993690510Coding
296. (GCT)41236936573693668Coding
297. (GGC)41237136533713664Coding
298. (GCA)51537166333716647Coding
299. (CGA)41237332423733253Coding
300. (GCG)41237662283766239Coding
301. (CGG)41237742643774275Coding
302. (CCG)41237764603776471Coding
303. (GCA)41237769423776953Coding
304. (GCG)51538204583820472Coding
305. (CCG)41238466723846683Coding
306. (GCC)41238857413885752Coding
307. (GGC)41238924463892457Coding
308. (TGG)41238935193893530Coding
309. (TTC)41239051483905159Coding
310. (GCC)41239405033940514Coding
311. (GGC)41239422593942270Non coding
312. (GGC)41239446133944624Coding
313. (GGC)51539698763969890Coding
314. (CCA)41239825743982585Coding
315. (CTG)41240261944026205Coding
316. (GCC)41240280484028059Coding
317. (CGC)41240322684032279Coding
318. (CGC)41240490334049044Coding
319. (ACG)41240496324049643Coding
320. (CGC)41240512844051295Coding
321. (CGC)41241118074111818Coding
322. (CGG)41241188574118868Non coding
323. (GGC)41241872634187274Coding
324. (GCG)51541898324189846Coding
325. (TGG)41241946124194623Coding
326. (CGG)51541952154195229Coding
327. (GGC)41242048544204865Coding
328. (AAT)41242067134206724Coding
329. (GCC)41243061044306115Coding
330. (CGG)41243168424316853Coding
331. (GAA)51543389914339005Coding
332. (TGC)41243577594357770Coding
333. (AGC)41243915124391523Coding
334. (CGG)41244437404443751Coding
335. (GGT)41244605184460529Coding
336. (CGC)51544701894470203Coding
337. (GCA)41244763154476326Coding
338. (CGG)41244844194484430Non coding
339. (GGC)41244963294496340Coding
340. (CAC)41245082154508226Coding
341. (GCC)51545407854540799Coding
342. (TAC)41245447804544791Coding
343. (GCG)41245496874549698Coding
344. (TGG)41245612494561260Coding
345. (CGG)41245623014562312Coding
346. (CAC)41246025484602559Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.