CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeobacter violaceus PCC 7421 (NC_005125 4659020 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 507     Density of SSR      : 1SSR/ 9.17 kb   Average length of SSR  : 12.78 bp
Coding      : 476     Non-Coding           : 28   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 7 346 123 13 18 507
IMPERFECT 2 266 3187 1345 149 167 5116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCCG)3122318923200Coding
2. (GCGG)3126220462215Coding
3. (CGGT)3129926499275Coding
4. (GCCG)312135556135567Coding
5. (GGCC)312136401136412Coding
6. (GGGT)312165389165400Coding
7. (ATCC)312316048316059Coding
8. (CCGC)312339566339577Non coding
9. (CCTG)312361853361864Coding
10. (CCCG)312363849363860Coding
11. (CGGG)312446340446351Coding
12. (TCCA)312494421494432Coding
13. (CGCC)312579770579781Coding
14. (ACTT)312599211599222Coding
15. (GCCC)312623181623192Coding
16. (CAGG)312662038662049Coding
17. (CCGG)312740896740907Coding
18. (CGGG)312914179914190Coding
19. (GGCG)312918572918583Coding
20. (CGCC)312933256933267Coding
21. (GGGT)312938979938990Coding
22. (CGGG)312980285980296Coding
23. (CCGG)312994747994758Coding
24. (AAAT)31210050201005031Coding
25. (GGCC)31210827851082796Coding
26. (TCGG)31211023241102335Coding
27. (CGCC)31211051061105117Coding
28. (CCGG)31211931111193122Coding
29. (TCGG)31212361511236162Coding
30. (GGCG)31212546651254676Coding
31. (CCCG)31212572381257249Coding
32. (GCTT)31212644651264476Non coding
33. (GGCC)31212950221295033Coding
34. (GGCC)31213108761310887Coding
35. (CGAG)31213138381313849Coding
36. (GTCG)31213330831333094Coding
37. (TATT)31213888231388834Coding
38. (GCGG)31214085661408577Coding
39. (GCCC)31214170711417082Coding
40. (GCGG)31214999691499980Coding
41. (GCCG)31215202581520269Non coding
42. (GCTT)31215727931572804Non coding
43. (TTTG)31215961471596158Coding
44. (CCCG)31216256471625658Coding
45. (GCCG)41616359361635951Coding
46. (TTGC)31216945711694582Coding
47. (CGGG)31217397261739737Coding
48. (CGAC)31217427831742794Coding
49. (AGCC)31217567191756730Coding
50. (GCCC)31217590731759084Coding
51. (TCGC)31217920231792034Coding
52. (TCGG)31218776521877663Coding
53. (CGGC)31219141891914200Coding
54. (GCGA)31219420121942023Coding
55. (CCGC)31219975531997564Coding
56. (CCGC)41620984742098489Coding
57. (TTGA)31221391152139126Non coding
58. (GCCG)31222422062242217Coding
59. (GGAA)31222603112260322Coding
60. (CGGG)31222643702264381Coding
61. (GGCA)31222730302273041Coding
62. (CTGC)31222831622283173Coding
63. (GGCA)31223798472379858Coding
64. (GGCG)31224512742451285Non coding
65. (CCCG)31224734532473464Coding
66. (GGCG)31224989492498960Coding
67. (CCAC)31225060122506023Coding
68. (CCGC)31225164722516483Coding
69. (TCCA)31226250452625056Non coding
70. (GGGC)31226408182640829Coding
71. (CCGA)31226561752656186Coding
72. (CGCC)31227088002708811Coding
73. (GCAG)31227108332710844Coding
74. (GCAG)31227160432716054Non coding
75. (CTGC)31227830032783014Coding
76. (CGGG)31227884162788427Coding
77. (CTGG)41629121812912196Coding
78. (CGGC)31229221312922142Coding
79. (CTGC)31229313682931379Coding
80. (GCGG)31229374962937507Non coding
81. (GGCA)31229716092971620Coding
82. (CCGC)31229797452979756Coding
83. (AGGC)31230121943012205Coding
84. (GTCC)31230883923088403Non coding
85. (CAGG)31231928933192904Non coding
86. (CCAG)31231954683195479Coding
87. (GCCC)41632111403211155Coding
88. (CGTG)31232194883219499Coding
89. (GCCC)31232366323236643Coding
90. (GGCA)31233024803302491Coding
91. (GGGC)31233851213385132Coding
92. (CCGG)31234149203414931Coding
93. (CGGC)31234150293415040Coding
94. (GGCG)31234745943474605Coding
95. (GGCG)31234800733480084Coding
96. (CCCG)31234820833482094Coding
97. (AGCC)31235099053509916Coding
98. (CGCC)31235138953513906Coding
99. (CCGC)31235950233595034Coding
100. (ACGC)31236000483600059Coding
101. (GCGG)31236287683628779Coding
102. (CCGG)31236294903629501Coding
103. (AGCC)31236578343657845Coding
104. (CCGC)31237026083702619Coding
105. (ATGG)31237659173765928Coding-Non coding
106. (GGCG)31238171233817134Coding
107. (GCCG)31238807243880735Coding
108. (CCGG)31239185563918567Coding
109. (CGCC)31239475923947603Coding
110. (CCGC)31239510153951026Coding
111. (GCGG)31239849073984918Coding
112. (GCCG)31240098914009902Coding
113. (CACC)41640293914029406Non coding
114. (GCGA)31241703654170376Coding
115. (ACCC)31242108474210858Coding
116. (GCCC)31242364994236510Coding
117. (CCGG)31243298714329882Coding
118. (CCCG)31244412264441237Coding
119. (GCGG)31244589834458994Coding
120. (CCGG)31245154014515412Coding
121. (AAAC)31245314344531445Coding
122. (CACC)31245877924587803Coding-Non coding
123. (GCCC)31246260704626081Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.