| |
Organism:
Gloeocapsa sp. PCC 7428
|
(NC_019745 , 5431449 bp)
|
|
Show Primer
Download
|
|
Compound
:
0
|
Perfect Compound
:
0
|
Overlapping Compound
:
0
|
|
Perfect
:
174
|
Density of SSR
:
1SSR/
31.22
kb
|
Average length of SSR
:
12.61
bp
|
|
Coding
:
152
|
Non-Coding
:
21
|
Coding and Non-Coding
:
1
|
| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
|
PERFECT
|
0
|
3
|
105
|
54
|
5
|
7
|
174
|
|
|
Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
|
1.
| (AAGC)3 | 12 | 130873 | 130884 | Coding |
|
2.
| (AATA)3 | 12 | 199991 | 200002 | Non coding |
|
3.
| (GCA)4 | 12 | 230361 | 230372 | Coding |
|
4.
| (CATCAC)3 | 18 | 239581 | 239598 | Coding |
|
5.
| (CAAC)3 | 12 | 373285 | 373296 | Coding |
|
6.
| (TGG)5 | 15 | 378625 | 378639 | Coding |
|
7.
| (AGG)4 | 12 | 404881 | 404892 | Coding |
|
8.
| (ATTC)3 | 12 | 441452 | 441463 | Coding |
|
9.
| (AAC)4 | 12 | 444573 | 444584 | Coding |
|
10.
| (GTT)4 | 12 | 554756 | 554767 | Coding |
|
11.
| (CTG)4 | 12 | 591440 | 591451 | Coding |
|
12.
| (CCGCAG)3 | 18 | 659083 | 659100 | Coding |
|
13.
| (CAAT)3 | 12 | 682558 | 682569 | Coding |
|
14.
| (CTTCGA)3 | 18 | 684460 | 684477 | Coding |
|
15.
| (TTG)4 | 12 | 692341 | 692352 | Coding |
|
16.
| (GCC)4 | 12 | 742236 | 742247 | Coding |
|
17.
| (TGA)4 | 12 | 804236 | 804247 | Coding |
|
18.
| (GATT)3 | 12 | 837750 | 837761 | Coding |
|
19.
| (GTTG)3 | 12 | 881996 | 882007 | Coding |
|
20.
| (ACCA)3 | 12 | 892388 | 892399 | Coding |
|
21.
| (CAT)4 | 12 | 903014 | 903025 | Coding |
|
22.
| (AGA)4 | 12 | 913827 | 913838 | Coding |
|
23.
| (GCT)4 | 12 | 940146 | 940157 | Coding |
|
24.
| (CCTA)5 | 20 | 950990 | 951009 | Non coding |
|
25.
| (GCAC)3 | 12 | 1002179 | 1002190 | Coding |
|
26.
| (TTG)4 | 12 | 1008225 | 1008236 | Coding |
|
27.
| (GTT)4 | 12 | 1008506 | 1008517 | Coding |
|
28.
| (TTC)4 | 12 | 1025695 | 1025706 | Coding |
|
29.
| (ATTT)3 | 12 | 1061994 | 1062005 | Non coding |
|
30.
| (AAC)4 | 12 | 1103373 | 1103384 | Coding |
|
31.
| (ACAA)3 | 12 | 1121379 | 1121390 | Coding |
|
32.
| (TGC)4 | 12 | 1204972 | 1204983 | Coding |
|
33.
| (ACC)4 | 12 | 1231765 | 1231776 | Coding |
|
34.
| (GCT)4 | 12 | 1237575 | 1237586 | Coding |
|
35.
| (ACC)4 | 12 | 1249064 | 1249075 | Coding |
|
36.
| (AGAA)3 | 12 | 1306466 | 1306477 | Coding |
|
37.
| (TTACA)3 | 15 | 1308985 | 1308999 | Coding |
|
38.
| (TAAA)3 | 12 | 1348398 | 1348409 | Coding |
|
39.
| (AAC)4 | 12 | 1357984 | 1357995 | Coding |
|
40.
| (AGTG)3 | 12 | 1362959 | 1362970 | Coding |
|
41.
| (GTG)5 | 15 | 1382256 | 1382270 | Coding |
|
42.
| (GCT)4 | 12 | 1406184 | 1406195 | Coding |
|
43.
| (CAG)4 | 12 | 1427757 | 1427768 | Coding |
|
44.
| (CTT)4 | 12 | 1483678 | 1483689 | Coding |
|
45.
| (TTA)4 | 12 | 1540508 | 1540519 | Coding |
|
46.
| (TCA)4 | 12 | 1545590 | 1545601 | Coding |
|
47.
| (TTG)4 | 12 | 1552197 | 1552208 | Coding |
|
48.
| (CTA)4 | 12 | 1565429 | 1565440 | Non coding |
|
49.
| (ATT)4 | 12 | 1581519 | 1581530 | Coding |
|
50.
| (TAAA)3 | 12 | 1584681 | 1584692 | Non coding |
|
51.
| (TATG)3 | 12 | 1588065 | 1588076 | Coding |
|
52.
| (TCG)4 | 12 | 1600816 | 1600827 | Coding |
|
53.
| (CG)6 | 12 | 1720980 | 1720991 | Coding |
|
54.
| (GTTTA)3 | 15 | 1756004 | 1756018 | Non coding |
|
55.
| (TGC)4 | 12 | 1786234 | 1786245 | Coding |
|
56.
| (GGC)5 | 15 | 1791516 | 1791530 | Coding |
|
57.
| (AATA)3 | 12 | 1841731 | 1841742 | Coding |
|
58.
| (CCG)4 | 12 | 1855133 | 1855144 | Coding |
|
59.
| (AACA)3 | 12 | 1866898 | 1866909 | Coding |
|
60.
| (TCA)5 | 15 | 2025690 | 2025704 | Coding |
|
61.
| (TCA)4 | 12 | 2025726 | 2025737 | Coding |
|
62.
| (CTAA)3 | 12 | 2045030 | 2045041 | Non coding |
|
63.
| (TAAG)3 | 12 | 2057515 | 2057526 | Coding |
|
64.
| (AATAA)3 | 15 | 2085677 | 2085691 | Coding |
|
65.
| (TGC)4 | 12 | 2176590 | 2176601 | Coding |
|
66.
| (TGG)4 | 12 | 2208629 | 2208640 | Coding |
|
67.
| (GTAT)3 | 12 | 2214066 | 2214077 | Coding |
|
68.
| (TGT)4 | 12 | 2221311 | 2221322 | Coding |
|
69.
| (GAC)4 | 12 | 2243984 | 2243995 | Coding |
|
70.
| (CAA)4 | 12 | 2298314 | 2298325 | Coding |
|
71.
| (CCA)5 | 15 | 2305162 | 2305176 | Coding |
|
72.
| (AAG)4 | 12 | 2310751 | 2310762 | Coding |
|
73.
| (AGAA)3 | 12 | 2319388 | 2319399 | Coding |
|
74.
| (GGATTG)3 | 18 | 2356420 | 2356437 | Coding |
|
75.
| (GCTG)3 | 12 | 2361069 | 2361080 | Coding |
|
76.
| (CCG)4 | 12 | 2402409 | 2402420 | Coding |
|
77.
| (ATTG)3 | 12 | 2454920 | 2454931 | Coding |
|
78.
| (AAT)4 | 12 | 2467671 | 2467682 | Coding |
|
79.
| (CCG)4 | 12 | 2493647 | 2493658 | Coding |
|
80.
| (ACT)4 | 12 | 2523977 | 2523988 | Coding |
|
81.
| (TTC)4 | 12 | 2530316 | 2530327 | Coding |
|
82.
| (GAA)4 | 12 | 2577681 | 2577692 | Coding |
|
83.
| (AGAA)3 | 12 | 2594248 | 2594259 | Coding |
|
84.
| (GTAC)3 | 12 | 2625568 | 2625579 | Coding |
|
85.
| (GGC)4 | 12 | 2625996 | 2626007 | Coding |
|
86.
| (CAG)4 | 12 | 2645490 | 2645501 | Coding |
|
87.
| (TAAA)3 | 12 | 2647628 | 2647639 | Coding |
|
88.
| (AGA)4 | 12 | 2662123 | 2662134 | Coding |
|
89.
| (TTTA)3 | 12 | 2686396 | 2686407 | Coding |
|
90.
| (AGGCTT)4 | 24 | 2711706 | 2711729 | Coding |
|
91.
| (ATT)4 | 12 | 2759138 | 2759149 | Coding |
|
92.
| (GTTT)3 | 12 | 2790574 | 2790585 | Coding |
|
93.
| (TGT)4 | 12 | 2834624 | 2834635 | Coding |
|
94.
| (TTG)4 | 12 | 2884296 | 2884307 | Coding |
|
95.
| (CGTT)3 | 12 | 2904277 | 2904288 | Coding |
|
96.
| (ACT)4 | 12 | 2908707 | 2908718 | Coding |
|
97.
| (GAT)4 | 12 | 2977738 | 2977749 | Coding |
|
98.
| (TCA)4 | 12 | 3014323 | 3014334 | Coding |
|
99.
| (TGC)4 | 12 | 3053838 | 3053849 | Coding |
|
100.
| (ACT)4 | 12 | 3131752 | 3131763 | Coding |
|
101.
| (GGT)4 | 12 | 3140619 | 3140630 | Coding |
|
102.
| (AGC)4 | 12 | 3157826 | 3157837 | Coding |
|
103.
| (GC)6 | 12 | 3216416 | 3216427 | Coding |
|
104.
| (CTG)4 | 12 | 3244759 | 3244770 | Coding |
|
105.
| (GAT)4 | 12 | 3314648 | 3314659 | Coding |
|
106.
| (GTT)4 | 12 | 3454914 | 3454925 | Coding |
|
107.
| (GATT)3 | 12 | 3461967 | 3461978 | Coding |
|
108.
| (AAAT)3 | 12 | 3464086 | 3464097 | Coding |
|
109.
| (CTTA)3 | 12 | 3484759 | 3484770 | Non coding |
|
110.
| (CGC)4 | 12 | 3522096 | 3522107 | Coding |
|
111.
| (TTG)4 | 12 | 3571740 | 3571751 | Coding |
|
112.
| (CAA)4 | 12 | 3577748 | 3577759 | Coding |
|
113.
| (GCA)4 | 12 | 3588314 | 3588325 | Coding |
|
114.
| (TCA)4 | 12 | 3595815 | 3595826 | Coding |
|
115.
| (GCG)4 | 12 | 3617993 | 3618004 | Coding |
|
116.
| (TGT)4 | 12 | 3639489 | 3639500 | Coding |
|
117.
| (GCG)4 | 12 | 3652720 | 3652731 | Coding |
|
118.
| (CCACGA)3 | 18 | 3715388 | 3715405 | Coding |
|
119.
| (TGC)6 | 18 | 3743000 | 3743017 | Coding |
|
120.
| (GTTA)3 | 12 | 3837839 | 3837850 | Coding-Non coding |
|
121.
| (TTAC)3 | 12 | 3882916 | 3882927 | Coding |
|
122.
| (CCG)4 | 12 | 3906896 | 3906907 | Coding |
|
123.
| (CTG)4 | 12 | 3947744 | 3947755 | Coding |
|
124.
| (TGTGG)3 | 15 | 3983251 | 3983265 | Non coding |
|
125.
| (CCA)4 | 12 | 3990590 | 3990601 | Coding |
|
126.
| (TGGT)3 | 12 | 4015345 | 4015356 | Coding |
|
127.
| (GCC)4 | 12 | 4060016 | 4060027 | Coding |
|
128.
| (TTAA)3 | 12 | 4098320 | 4098331 | Non coding |
|
129.
| (TAC)4 | 12 | 4159578 | 4159589 | Coding |
|
130.
| (CTG)4 | 12 | 4162447 | 4162458 | Coding |
|
131.
| (ACA)4 | 12 | 4169838 | 4169849 | Coding |
|
132.
| (GATT)3 | 12 | 4240025 | 4240036 | Coding |
|
133.
| (CAA)4 | 12 | 4262036 | 4262047 | Coding |
|
134.
| (GGT)4 | 12 | 4311490 | 4311501 | Coding |
|
135.
| (ACTT)3 | 12 | 4313253 | 4313264 | Non coding |
|
136.
| (TAAA)3 | 12 | 4354314 | 4354325 | Coding |
|
137.
| (CGC)4 | 12 | 4378016 | 4378027 | Coding |
|
138.
| (TAAA)3 | 12 | 4384990 | 4385001 | Non coding |
|
139.
| (CAA)4 | 12 | 4418972 | 4418983 | Coding |
|
140.
| (GGTT)3 | 12 | 4421991 | 4422002 | Coding |
|
141.
| (GGGGCA)3 | 18 | 4432575 | 4432592 | Non coding |
|
142.
| (AGC)6 | 18 | 4433210 | 4433227 | Coding |
|
143.
| (ACC)4 | 12 | 4511029 | 4511040 | Non coding |
|
144.
| (AGC)5 | 15 | 4527560 | 4527574 | Coding |
|
145.
| (CTG)4 | 12 | 4549306 | 4549317 | Coding |
|
146.
| (TTTG)3 | 12 | 4549808 | 4549819 | Coding |
|
147.
| (AAAT)3 | 12 | 4550400 | 4550411 | Coding |
|
148.
| (CTC)4 | 12 | 4561818 | 4561829 | Coding |
|
149.
| (ACA)4 | 12 | 4573142 | 4573153 | Non coding |
|
150.
| (GCG)4 | 12 | 4595698 | 4595709 | Coding |
|
151.
| (TGT)4 | 12 | 4664720 | 4664731 | Coding |
|
152.
| (TCAA)3 | 12 | 4754424 | 4754435 | Non coding |
|
153.
| (TCGCC)3 | 15 | 4779540 | 4779554 | Coding |
|
154.
| (GCT)4 | 12 | 4829515 | 4829526 | Coding |
|
155.
| (CCA)4 | 12 | 4845223 | 4845234 | Coding |
|
156.
| (TGG)4 | 12 | 4861381 | 4861392 | Coding |
|
157.
| (CCAA)3 | 12 | 4862056 | 4862067 | Coding |
|
158.
| (ATAA)3 | 12 | 4921283 | 4921294 | Non coding |
|
159.
| (CTA)4 | 12 | 4977994 | 4978005 | Coding |
|
160.
| (GGT)4 | 12 | 5049501 | 5049512 | Coding |
|
161.
| (TATT)3 | 12 | 5074697 | 5074708 | Coding |
|
162.
| (ACA)4 | 12 | 5155294 | 5155305 | Coding |
|
163.
| (AGC)5 | 15 | 5172069 | 5172083 | Non coding |
|
164.
| (GCT)4 | 12 | 5173163 | 5173174 | Coding |
|
165.
| (ACA)5 | 15 | 5191589 | 5191603 | Coding |
|
166.
| (TCGG)3 | 12 | 5203013 | 5203024 | Coding |
|
167.
| (GCAA)3 | 12 | 5207996 | 5208007 | Non coding |
|
168.
| (TGC)4 | 12 | 5278380 | 5278391 | Coding |
|
169.
| (GCC)4 | 12 | 5280166 | 5280177 | Coding |
|
170.
| (GCT)4 | 12 | 5302397 | 5302408 | Coding |
|
171.
| (ATAA)3 | 12 | 5325073 | 5325084 | Coding |
|
172.
| (TATT)3 | 12 | 5344971 | 5344982 | Non coding |
|
173.
| (TATT)3 | 12 | 5378158 | 5378169 | Non coding |
|
174.
| (GC)6 | 12 | 5410048 | 5410059 | Coding |
|
|
|
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
Best viewed at 1280 x 768.
|
|
|