CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Gloeocapsa sp. PCC 7428 (NC_019745 5431449 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 174     Density of SSR      : 1SSR/ 31.22 kb   Average length of SSR  : 12.61 bp
Coding      : 152     Non-Coding           : 21   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 105 54 5 7 174
IMPERFECT 0 152 1665 1294 148 89 3348
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAGC)312130873130884Coding
2. (AATA)312199991200002Non coding
3. (GCA)412230361230372Coding
4. (CATCAC)318239581239598Coding
5. (CAAC)312373285373296Coding
6. (TGG)515378625378639Coding
7. (AGG)412404881404892Coding
8. (ATTC)312441452441463Coding
9. (AAC)412444573444584Coding
10. (GTT)412554756554767Coding
11. (CTG)412591440591451Coding
12. (CCGCAG)318659083659100Coding
13. (CAAT)312682558682569Coding
14. (CTTCGA)318684460684477Coding
15. (TTG)412692341692352Coding
16. (GCC)412742236742247Coding
17. (TGA)412804236804247Coding
18. (GATT)312837750837761Coding
19. (GTTG)312881996882007Coding
20. (ACCA)312892388892399Coding
21. (CAT)412903014903025Coding
22. (AGA)412913827913838Coding
23. (GCT)412940146940157Coding
24. (CCTA)520950990951009Non coding
25. (GCAC)31210021791002190Coding
26. (TTG)41210082251008236Coding
27. (GTT)41210085061008517Coding
28. (TTC)41210256951025706Coding
29. (ATTT)31210619941062005Non coding
30. (AAC)41211033731103384Coding
31. (ACAA)31211213791121390Coding
32. (TGC)41212049721204983Coding
33. (ACC)41212317651231776Coding
34. (GCT)41212375751237586Coding
35. (ACC)41212490641249075Coding
36. (AGAA)31213064661306477Coding
37. (TTACA)31513089851308999Coding
38. (TAAA)31213483981348409Coding
39. (AAC)41213579841357995Coding
40. (AGTG)31213629591362970Coding
41. (GTG)51513822561382270Coding
42. (GCT)41214061841406195Coding
43. (CAG)41214277571427768Coding
44. (CTT)41214836781483689Coding
45. (TTA)41215405081540519Coding
46. (TCA)41215455901545601Coding
47. (TTG)41215521971552208Coding
48. (CTA)41215654291565440Non coding
49. (ATT)41215815191581530Coding
50. (TAAA)31215846811584692Non coding
51. (TATG)31215880651588076Coding
52. (TCG)41216008161600827Coding
53. (CG)61217209801720991Coding
54. (GTTTA)31517560041756018Non coding
55. (TGC)41217862341786245Coding
56. (GGC)51517915161791530Coding
57. (AATA)31218417311841742Coding
58. (CCG)41218551331855144Coding
59. (AACA)31218668981866909Coding
60. (TCA)51520256902025704Coding
61. (TCA)41220257262025737Coding
62. (CTAA)31220450302045041Non coding
63. (TAAG)31220575152057526Coding
64. (AATAA)31520856772085691Coding
65. (TGC)41221765902176601Coding
66. (TGG)41222086292208640Coding
67. (GTAT)31222140662214077Coding
68. (TGT)41222213112221322Coding
69. (GAC)41222439842243995Coding
70. (CAA)41222983142298325Coding
71. (CCA)51523051622305176Coding
72. (AAG)41223107512310762Coding
73. (AGAA)31223193882319399Coding
74. (GGATTG)31823564202356437Coding
75. (GCTG)31223610692361080Coding
76. (CCG)41224024092402420Coding
77. (ATTG)31224549202454931Coding
78. (AAT)41224676712467682Coding
79. (CCG)41224936472493658Coding
80. (ACT)41225239772523988Coding
81. (TTC)41225303162530327Coding
82. (GAA)41225776812577692Coding
83. (AGAA)31225942482594259Coding
84. (GTAC)31226255682625579Coding
85. (GGC)41226259962626007Coding
86. (CAG)41226454902645501Coding
87. (TAAA)31226476282647639Coding
88. (AGA)41226621232662134Coding
89. (TTTA)31226863962686407Coding
90. (AGGCTT)42427117062711729Coding
91. (ATT)41227591382759149Coding
92. (GTTT)31227905742790585Coding
93. (TGT)41228346242834635Coding
94. (TTG)41228842962884307Coding
95. (CGTT)31229042772904288Coding
96. (ACT)41229087072908718Coding
97. (GAT)41229777382977749Coding
98. (TCA)41230143233014334Coding
99. (TGC)41230538383053849Coding
100. (ACT)41231317523131763Coding
101. (GGT)41231406193140630Coding
102. (AGC)41231578263157837Coding
103. (GC)61232164163216427Coding
104. (CTG)41232447593244770Coding
105. (GAT)41233146483314659Coding
106. (GTT)41234549143454925Coding
107. (GATT)31234619673461978Coding
108. (AAAT)31234640863464097Coding
109. (CTTA)31234847593484770Non coding
110. (CGC)41235220963522107Coding
111. (TTG)41235717403571751Coding
112. (CAA)41235777483577759Coding
113. (GCA)41235883143588325Coding
114. (TCA)41235958153595826Coding
115. (GCG)41236179933618004Coding
116. (TGT)41236394893639500Coding
117. (GCG)41236527203652731Coding
118. (CCACGA)31837153883715405Coding
119. (TGC)61837430003743017Coding
120. (GTTA)31238378393837850Coding-Non coding
121. (TTAC)31238829163882927Coding
122. (CCG)41239068963906907Coding
123. (CTG)41239477443947755Coding
124. (TGTGG)31539832513983265Non coding
125. (CCA)41239905903990601Coding
126. (TGGT)31240153454015356Coding
127. (GCC)41240600164060027Coding
128. (TTAA)31240983204098331Non coding
129. (TAC)41241595784159589Coding
130. (CTG)41241624474162458Coding
131. (ACA)41241698384169849Coding
132. (GATT)31242400254240036Coding
133. (CAA)41242620364262047Coding
134. (GGT)41243114904311501Coding
135. (ACTT)31243132534313264Non coding
136. (TAAA)31243543144354325Coding
137. (CGC)41243780164378027Coding
138. (TAAA)31243849904385001Non coding
139. (CAA)41244189724418983Coding
140. (GGTT)31244219914422002Coding
141. (GGGGCA)31844325754432592Non coding
142. (AGC)61844332104433227Coding
143. (ACC)41245110294511040Non coding
144. (AGC)51545275604527574Coding
145. (CTG)41245493064549317Coding
146. (TTTG)31245498084549819Coding
147. (AAAT)31245504004550411Coding
148. (CTC)41245618184561829Coding
149. (ACA)41245731424573153Non coding
150. (GCG)41245956984595709Coding
151. (TGT)41246647204664731Coding
152. (TCAA)31247544244754435Non coding
153. (TCGCC)31547795404779554Coding
154. (GCT)41248295154829526Coding
155. (CCA)41248452234845234Coding
156. (TGG)41248613814861392Coding
157. (CCAA)31248620564862067Coding
158. (ATAA)31249212834921294Non coding
159. (CTA)41249779944978005Coding
160. (GGT)41250495015049512Coding
161. (TATT)31250746975074708Coding
162. (ACA)41251552945155305Coding
163. (AGC)51551720695172083Non coding
164. (GCT)41251731635173174Coding
165. (ACA)51551915895191603Coding
166. (TCGG)31252030135203024Coding
167. (GCAA)31252079965208007Non coding
168. (TGC)41252783805278391Coding
169. (GCC)41252801665280177Coding
170. (GCT)41253023975302408Coding
171. (ATAA)31253250735325084Coding
172. (TATT)31253449715344982Non coding
173. (TATT)31253781585378169Non coding
174. (GC)61254100485410059Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.