CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeocapsa sp. PCC 7428 (NC_019745 5431449 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 174     Density of SSR      : 1SSR/ 31.22 kb   Average length of SSR  : 12.61 bp
Coding      : 152     Non-Coding           : 21   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 105 54 5 7 174
IMPERFECT 0 152 1665 1294 148 89 3348
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)412230361230372Coding
2. (TGG)515378625378639Coding
3. (AGG)412404881404892Coding
4. (AAC)412444573444584Coding
5. (GTT)412554756554767Coding
6. (CTG)412591440591451Coding
7. (TTG)412692341692352Coding
8. (GCC)412742236742247Coding
9. (TGA)412804236804247Coding
10. (CAT)412903014903025Coding
11. (AGA)412913827913838Coding
12. (GCT)412940146940157Coding
13. (TTG)41210082251008236Coding
14. (GTT)41210085061008517Coding
15. (TTC)41210256951025706Coding
16. (AAC)41211033731103384Coding
17. (TGC)41212049721204983Coding
18. (ACC)41212317651231776Coding
19. (GCT)41212375751237586Coding
20. (ACC)41212490641249075Coding
21. (AAC)41213579841357995Coding
22. (GTG)51513822561382270Coding
23. (GCT)41214061841406195Coding
24. (CAG)41214277571427768Coding
25. (CTT)41214836781483689Coding
26. (TTA)41215405081540519Coding
27. (TCA)41215455901545601Coding
28. (TTG)41215521971552208Coding
29. (CTA)41215654291565440Non coding
30. (ATT)41215815191581530Coding
31. (TCG)41216008161600827Coding
32. (TGC)41217862341786245Coding
33. (GGC)51517915161791530Coding
34. (CCG)41218551331855144Coding
35. (TCA)51520256902025704Coding
36. (TCA)41220257262025737Coding
37. (TGC)41221765902176601Coding
38. (TGG)41222086292208640Coding
39. (TGT)41222213112221322Coding
40. (GAC)41222439842243995Coding
41. (CAA)41222983142298325Coding
42. (CCA)51523051622305176Coding
43. (AAG)41223107512310762Coding
44. (CCG)41224024092402420Coding
45. (AAT)41224676712467682Coding
46. (CCG)41224936472493658Coding
47. (ACT)41225239772523988Coding
48. (TTC)41225303162530327Coding
49. (GAA)41225776812577692Coding
50. (GGC)41226259962626007Coding
51. (CAG)41226454902645501Coding
52. (AGA)41226621232662134Coding
53. (ATT)41227591382759149Coding
54. (TGT)41228346242834635Coding
55. (TTG)41228842962884307Coding
56. (ACT)41229087072908718Coding
57. (GAT)41229777382977749Coding
58. (TCA)41230143233014334Coding
59. (TGC)41230538383053849Coding
60. (ACT)41231317523131763Coding
61. (GGT)41231406193140630Coding
62. (AGC)41231578263157837Coding
63. (CTG)41232447593244770Coding
64. (GAT)41233146483314659Coding
65. (GTT)41234549143454925Coding
66. (CGC)41235220963522107Coding
67. (TTG)41235717403571751Coding
68. (CAA)41235777483577759Coding
69. (GCA)41235883143588325Coding
70. (TCA)41235958153595826Coding
71. (GCG)41236179933618004Coding
72. (TGT)41236394893639500Coding
73. (GCG)41236527203652731Coding
74. (TGC)61837430003743017Coding
75. (CCG)41239068963906907Coding
76. (CTG)41239477443947755Coding
77. (CCA)41239905903990601Coding
78. (GCC)41240600164060027Coding
79. (TAC)41241595784159589Coding
80. (CTG)41241624474162458Coding
81. (ACA)41241698384169849Coding
82. (CAA)41242620364262047Coding
83. (GGT)41243114904311501Coding
84. (CGC)41243780164378027Coding
85. (CAA)41244189724418983Coding
86. (AGC)61844332104433227Coding
87. (ACC)41245110294511040Non coding
88. (AGC)51545275604527574Coding
89. (CTG)41245493064549317Coding
90. (CTC)41245618184561829Coding
91. (ACA)41245731424573153Non coding
92. (GCG)41245956984595709Coding
93. (TGT)41246647204664731Coding
94. (GCT)41248295154829526Coding
95. (CCA)41248452234845234Coding
96. (TGG)41248613814861392Coding
97. (CTA)41249779944978005Coding
98. (GGT)41250495015049512Coding
99. (ACA)41251552945155305Coding
100. (AGC)51551720695172083Non coding
101. (GCT)41251731635173174Coding
102. (ACA)51551915895191603Coding
103. (TGC)41252783805278391Coding
104. (GCC)41252801665280177Coding
105. (GCT)41253023975302408Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.