CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Gloeocapsa sp. PCC 7428 (NC_019745 5431449 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 174     Density of SSR      : 1SSR/ 31.22 kb   Average length of SSR  : 12.61 bp
Coding      : 152     Non-Coding           : 21   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 105 54 5 7 174
IMPERFECT 0 152 1665 1294 148 89 3348
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAGC)312130873130884Coding
2. (AATA)312199991200002Non coding
3. (CAAC)312373285373296Coding
4. (ATTC)312441452441463Coding
5. (CAAT)312682558682569Coding
6. (GATT)312837750837761Coding
7. (GTTG)312881996882007Coding
8. (ACCA)312892388892399Coding
9. (CCTA)520950990951009Non coding
10. (GCAC)31210021791002190Coding
11. (ATTT)31210619941062005Non coding
12. (ACAA)31211213791121390Coding
13. (AGAA)31213064661306477Coding
14. (TAAA)31213483981348409Coding
15. (AGTG)31213629591362970Coding
16. (TAAA)31215846811584692Non coding
17. (TATG)31215880651588076Coding
18. (AATA)31218417311841742Coding
19. (AACA)31218668981866909Coding
20. (CTAA)31220450302045041Non coding
21. (TAAG)31220575152057526Coding
22. (GTAT)31222140662214077Coding
23. (AGAA)31223193882319399Coding
24. (GCTG)31223610692361080Coding
25. (ATTG)31224549202454931Coding
26. (AGAA)31225942482594259Coding
27. (GTAC)31226255682625579Coding
28. (TAAA)31226476282647639Coding
29. (TTTA)31226863962686407Coding
30. (GTTT)31227905742790585Coding
31. (CGTT)31229042772904288Coding
32. (GATT)31234619673461978Coding
33. (AAAT)31234640863464097Coding
34. (CTTA)31234847593484770Non coding
35. (GTTA)31238378393837850Coding-Non coding
36. (TTAC)31238829163882927Coding
37. (TGGT)31240153454015356Coding
38. (TTAA)31240983204098331Non coding
39. (GATT)31242400254240036Coding
40. (ACTT)31243132534313264Non coding
41. (TAAA)31243543144354325Coding
42. (TAAA)31243849904385001Non coding
43. (GGTT)31244219914422002Coding
44. (TTTG)31245498084549819Coding
45. (AAAT)31245504004550411Coding
46. (TCAA)31247544244754435Non coding
47. (CCAA)31248620564862067Coding
48. (ATAA)31249212834921294Non coding
49. (TATT)31250746975074708Coding
50. (TCGG)31252030135203024Coding
51. (GCAA)31252079965208007Non coding
52. (ATAA)31253250735325084Coding
53. (TATT)31253449715344982Non coding
54. (TATT)31253781585378169Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.