CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.48 kb   Average length of SSR  : 12.27 bp
Coding      : 2338     Non-Coding           : 420   Coding and Non-Coding : 57
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. GA112049020500Coding
2. CA136395563967Non coding
3. TC119585895868Coding
4. CT11108614108624Coding
5. GA11134874134884Coding
6. CT11139912139922Non coding
7. GA11240852240862Coding
8. GA13278806278818Non coding
9. AG11311596311606Coding
10. AG11352333352343Coding
11. TC13364892364904Coding
12. CT12365186365197Coding
13. CT11406203406213Non coding
14. TA12423387423398Non coding
15. TC12427363427374Coding
16. TC11463969463979Non coding
17. GA11467083467093Coding-Non coding
18. CT11493912493922Coding
19. TC12531411531422Coding
20. CG11538555538565Coding
21. CT11672802672812Coding
22. AG11752959752969Non coding
23. TC11807097807107Coding
24. AT11814141814151Non coding
25. AT14869293869306Coding
26. TC11882846882856Coding
27. CT11883782883792Coding
28. AG11987476987486Coding
29. AT1210018521001863Coding
30. GA1110023071002317Coding
31. AT1210023711002382Non coding
32. GA1110025081002518Non coding
33. AT1210028131002824Non coding
34. GA1110029501002960Non coding
35. GA1110031891003199Coding
36. AT1210032531003264Non coding
37. AT1210046601004671Non coding
38. TC1210062381006249Coding
39. CT1110093021009312Coding
40. CT1110313121031322Coding
41. TC1110748841074894Non coding
42. TC1110894521089462Coding
43. AG1411261931126206Coding
44. TC1212129141212925Coding
45. GA1112408571240867Coding
46. GA1114229441422954Non coding
47. AG1114236691423679Non coding
48. TG1114945111494521Coding
49. GA1215113551511366Coding
50. TC1115147731514783Coding
51. GA1115305631530573Coding
52. GA1115311021531112Coding
53. GA1116148871614897Coding
54. GA1116754401675450Coding
55. CA1116795781679588Coding
56. TC1117175511717561Coding
57. TC1118191631819173Non coding
58. GA1118277401827750Coding
59. TC1118592121859222Coding
60. GA1118936821893692Coding
61. TC1119371641937174Coding
62. CT1119530091953019Non coding
63. CT1120460672046077Coding
64. CT1222262852226296Coding
65. AG1222937132293724Coding-Non coding
66. GA1323242992324311Non coding
67. GA1323377232337735Coding
68. AG1123523212352331Coding
69. TC1123606082360618Coding
70. CT1124387542438764Coding
71. CT1124841222484132Non coding
72. GA1126164072616417Coding
73. AG1126277222627732Non coding
74. AG1226469492646960Coding
75. AG1126760602676070Coding
76. GA1126764072676417Non coding
77. CT1226777352677746Non coding
78. GA1126951012695111Coding
79. AG1127244292724439Coding
80. GA1427269342726947Non coding
81. CG1127647802764790Coding
82. AG1127719152771925Coding
83. GA1127920772792087Non coding
84. GA1128216452821655Coding
85. CT1228225252822536Coding
86. GA1228676992867710Coding
87. CT1128927332892743Coding
88. CT1129738222973832Coding
89. AT1129834922983502Non coding
90. GA1229835312983542Non coding
91. GA1230092473009258Non coding
92. TC1130129373012947Coding
93. CT1130340033034013Coding
94. AT1130386143038624Coding-Non coding
95. GA1130702053070215Coding
96. CT1131125663112576Non coding
97. AG1331487833148795Coding
98. TC1131787003178710Coding
99. TC1132064713206481Coding
100. GA1132447863244796Coding
101. CT1233000993300110Non coding
102. TC1233052763305287Coding
103. CT1233224853322496Coding
104. TC1133945713394581Coding
105. TG1134194693419479Coding
106. CG1134205783420588Non coding
107. AT1134342783434288Non coding
108. TC1334384833438495Coding
109. GA1134484493448459Coding
110. CT1235469303546941Non coding
111. GA1135790783579088Coding
112. GT1336581063658118Non coding
113. GA1137258933725903Coding
114. GA1337920743792086Coding
115. CT1238903873890398Coding
116. GA1139466713946681Non coding
117. TC1139572733957283Coding
118. TC1239877543987765Coding
119. TC1140375954037605Coding
120. AG1140544554054465Non coding
121. CT1240544714054482Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.