CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.48 kb   Average length of SSR  : 12.27 bp
Coding      : 2338     Non-Coding           : 420   Coding and Non-Coding : 57
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. CCTGAA309732097349Coding
2. CTGATG18151192151209Coding
3. GAACCA36199581199616Coding
4. CCGAAG25199794199818Coding
5. CCGAAG25199875199899Coding
6. CTCCCT18219135219152Non coding
7. ACAAGA18261120261137Coding
8. CTTATC48271016271063Coding
9. TTGACC24271058271081Coding
10. TGTTCT18357124357141Coding
11. GTTCTT18373394373411Coding
12. AGGGGG18501086501103Coding
13. CATCCT18545291545308Coding
14. CGCGAT18571552571569Coding
15. ATTCAG17608420608436Non coding
16. ATGAAC19625899625917Non coding
17. CTAATC18848428848445Coding
18. AATTTT19868806868824Coding
19. TAAAAT19934830934848Coding
20. CAGGAA18945865945882Coding
21. ATCCCC19959897959915Coding
22. CTGTTG2410101901010213Coding
23. TTTCAC1810281001028117Coding
24. TCTTTC1810308291030846Coding
25. TTGCCA1810489231048940Coding
26. GGATCA1811194641119481Coding
27. TTGATT1811930791193096Coding
28. TTTTTA1812342301234247Non coding
29. AGCAAA1812539261253943Coding
30. GAAACT2412572351257258Coding
31. CGCGAT1812925781292595Non coding
32. AAGCCA1812927151292732Coding
33. GGCAAA1913277321327750Coding
34. CCACGA1815108911510908Coding
35. CGATCG1815222241522241Coding
36. ACAATA1915593941559412Coding
37. TACCAA1815761301576147Coding
38. GATTGG1816509551650972Coding
39. TTATGA1916728771672895Coding-Non coding
40. CAGTTC1817492431749260Coding
41. AATGGC1817719881772005Coding
42. TGAACT1917964011796419Coding-Non coding
43. TTAGTT1818155591815576Non coding
44. GATCGC1918390201839038Coding
45. TTCCCG1918412081841226Non coding
46. TGTTTC1818845841884601Coding
47. CCGATC1919141541914172Coding
48. CGCGAT1819343501934367Coding
49. CCCCGT1819796471979664Coding
50. GGTGGC7220123492012420Coding
51. AGCAAG1720255782025594Coding
52. AGCAAG1822156822215699Coding
53. AGAATT1822393102239327Coding
54. ATTTTT2522851722285196Coding
55. GGAACA1822887872288804Coding
56. GATAAG1822892582289275Coding
57. AATGGT1822967022296719Coding
58. CCGCCA1924625672462585Coding
59. TTTTAA1824656422465659Coding
60. AATTTA1925728942572912Coding
61. TCTTGT1827216212721638Coding
62. GCTTCT1827611572761174Coding
63. CATGAT1827890502789067Coding
64. GGATAT1828240952824112Coding
65. GGAAAT1928613422861360Coding
66. GAAGAT1828824412882458Coding
67. CACCTG1828957832895800Coding
68. AACGCC1828996982899715Coding
69. AAAAAG1929223912922409Coding
70. AAACAA1829945822994599Coding
71. TTCGGC1833022323302249Coding
72. TTCGGC1833023223302339Coding
73. AAGAGG1734139763413992Non coding
74. TTTTCG1935771693577187Coding
75. AACCAT1836411813641198Coding
76. TTCTTT2436942333694256Coding
77. TCTCCT1837719743771991Coding
78. TTAATT1938406623840680Non coding
79. TGGCTG1938444643844482Coding
80. TTGGTT1838556373855654Coding
81. TGGGCG1838689043868921Coding
82. ATGGTC1839137723913789Coding
83. TTCTTT2439269103926933Coding
84. CTTTCT1739313993931415Coding
85. TCTCCC1840695844069601Coding
86. GAGTAA1940707834070801Coding
87. TTGCGC1940796574079675Non coding
88. CAGAAG1841158894115906Coding
89. AATGAT1741685934168609Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.