CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 21.88 kb   Average length of SSR  : 13.07 bp
Coding      : 172     Non-Coding           : 16   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCTGG)3183875238769Coding
2. (CCTGAA)4249732097343Coding
3. (GAACCA)318199587199604Coding
4. (AGAAGC)318823728823745Coding
5. (GCAATG)318854440854457Coding
6. (AGTGAA)31816167721616789Coding
7. (CCAGTT)31817492421749259Coding
8. (GGTGGC)31820123672012384Coding
9. (GGTGGC)42420123912012414Coding
10. (GGCTTT)31834112543411271Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.