CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 21.88 kb   Average length of SSR  : 13.07 bp
Coding      : 172     Non-Coding           : 16   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATAAA)3151344813462Coding
2. (GAA)4123358633597Coding
3. (TTCTGG)3183875238769Coding
4. (GGAAA)3154327543289Coding
5. (CCTGAA)4249732097343Coding
6. (AACA)312155884155895Non coding
7. (AGC)515158942158956Coding
8. (TTAT)312165218165229Coding
9. (TCA)412185620185631Coding
10. (GAACCA)318199587199604Coding
11. (TTTC)312214995215006Non coding
12. (GAT)412260356260367Coding
13. (ATTT)312266027266038Coding
14. (TTAT)312274782274793Coding
15. (TTTA)312283810283821Coding
16. (CCAG)312334967334978Coding
17. (ATTA)312354230354241Coding-Non coding
18. (GTTT)312359621359632Non coding
19. (GCT)412373507373518Coding
20. (AAAC)312436883436894Coding
21. (ATTA)312459301459312Coding
22. (AGC)412512439512450Coding
23. (GGA)412555256555267Coding
24. (AGA)412578363578374Coding
25. (CTG)412592828592839Coding
26. (ATTC)312646452646463Coding-Non coding
27. (GAT)515694604694618Coding
28. (AGA)618711493711510Coding
29. (GCT)412727913727924Coding
30. (ATT)412736904736915Coding
31. (TTTGG)315737416737430Coding
32. (TTTA)312759229759240Coding
33. (CTG)412790106790117Coding
34. (CTG)412790142790153Coding
35. (CTG)412790178790189Coding
36. (CTG)412790214790225Coding
37. (CTG)412790250790261Coding
38. (CAG)412807505807516Coding
39. (AGAAGC)318823728823745Coding
40. (GCAATG)318854440854457Coding
41. (AAC)412865805865816Coding
42. (TGC)412912867912878Coding
43. (TGC)412974904974915Coding
44. (AAG)412975083975094Coding
45. (TCTT)312998425998436Coding
46. (TTTG)312998911998922Coding
47. (TAA)41210135611013572Coding
48. (GTA)41210450991045110Non coding
49. (ATC)41211167301116741Coding
50. (CTT)41211503391150350Coding
51. (TCT)51511797271179741Coding
52. (TTC)41211929951193006Coding
53. (CAAT)31212104781210489Coding
54. (ATTA)31212126701212681Coding-Non coding
55. (CAG)41212144811214492Coding
56. (AGT)41212539441253955Coding
57. (ATC)41212619631261974Non coding
58. (TATT)31212761541276165Coding
59. (AAG)41213064481306459Coding
60. (TC)61213068851306896Coding
61. (TTTA)31213135501313561Coding
62. (ATTA)31213320111332022Non coding
63. (GCT)41213332521333263Coding
64. (CCA)41213351941335205Coding
65. (GCA)41213354641335475Coding
66. (CAA)41213428251342836Coding
67. (GAT)51513826661382680Coding
68. (AGA)41214048311404842Coding
69. (GTTG)31214153411415352Coding
70. (CTG)41214820671482078Coding
71. (TGT)41214833391483350Coding
72. (GCA)41214890401489051Coding
73. (TTTTG)31515696801569694Coding
74. (TCA)41215924441592455Non coding
75. (CCTT)31215991541599165Coding
76. (AATT)31216053031605314Coding
77. (AGTGAA)31816167721616789Coding
78. (GCA)41216513371651348Coding
79. (CAC)41216694861669497Coding
80. (TTTA)31217165681716579Coding
81. (TATT)31217333451733356Coding
82. (CTC)41217412341741245Coding
83. (CCAGTT)31817492421749259Coding
84. (AATA)31217679441767955Coding
85. (GCA)41217707871770798Coding
86. (GCT)41217853841785395Coding
87. (TTGC)31218993421899353Coding
88. (AGA)41219661081966119Coding
89. (TCA)61819730431973060Coding
90. (GAA)41219793381979349Coding
91. (GAA)41219992581999269Coding
92. (GGTGGC)31820123672012384Coding
93. (GGTGGC)42420123912012414Coding
94. (CAAA)31220144192014430Coding
95. (TGC)41220348682034879Coding
96. (AGC)41220737952073806Coding
97. (GCA)41220988922098903Coding
98. (TTA)41221223322122343Coding
99. (GCA)41221257892125800Coding
100. (TTC)41221513322151343Coding
101. (TTC)41222322812232292Coding
102. (TTTA)31222657162265727Coding
103. (TGC)41222739732273984Coding
104. (AAGC)31222840012284012Coding
105. (TTC)41223507602350771Coding
106. (TGC)41223683292368340Coding
107. (AGA)41223879572387968Coding
108. (CAAC)31223967832396794Coding
109. (TGC)41224070362407047Coding
110. (TAAA)31224351452435156Coding
111. (ATG)41224353392435350Coding
112. (CAA)41224440682444079Coding
113. (CAAA)31224497592449770Coding
114. (GGTT)31224557152455726Coding
115. (AGC)41224887822488793Coding
116. (TGAC)31225082182508229Coding
117. (TGG)41225100972510108Coding
118. (AACC)31225371102537121Coding
119. (CTT)41225516432551654Non coding
120. (GCAA)31225661652566176Coding
121. (AAG)72125781302578150Coding
122. (AATG)31225873372587348Coding
123. (GAA)41225969702596981Coding
124. (GAA)41225970152597026Coding
125. (TGC)41226036982603709Coding
126. (AGC)41226065422606553Coding
127. (TCT)41226345632634574Coding
128. (GAG)41226621732662184Non coding
129. (GAA)41226801932680204Coding
130. (AATC)31227226732722684Coding
131. (CCAAA)31527629282762942Coding
132. (TG)61227936302793641Coding
133. (GCA)41228289662828977Coding
134. (TCG)41228531702853181Coding
135. (GCA)41228979562897967Non coding
136. (GCA)41229157592915770Coding
137. (TCT)41229327972932808Coding
138. (TGC)51529546192954633Coding
139. (AGC)41229639822963993Coding
140. (ACAG)31229852322985243Non coding
141. (GCA)41229895532989564Coding
142. (TTAT)31230048223004833Coding
143. (TTCC)31230123603012371Coding
144. (TTC)41230297563029767Coding
145. (CTT)41231510023151013Coding
146. (TGC)41231680683168079Coding
147. (TCT)41232196643219675Coding
148. (TTG)41232515773251588Coding
149. (CAT)41232522733252284Coding
150. (ATTT)31232682743268285Coding
151. (AAT)41233084323308443Coding
152. (GAA)41233377233337734Coding
153. (CAT)41233590173359028Coding
154. (GCA)41233620253362036Coding
155. (AATT)31233653133365324Coding
156. (GGCTTT)31834112543411271Coding
157. (CTT)51534112833411297Coding
158. (AAG)41234320903432101Coding
159. (ATT)41234374883437499Coding
160. (GAA)41234686373468648Coding
161. (GATT)31234814013481412Coding
162. (CTG)41235079043507915Coding
163. (GCT)41235289473528958Coding
164. (AGA)41235635243563535Non coding
165. (CAA)41235807593580770Coding
166. (CTG)41235938203593831Coding
167. (GCA)51536505253650539Coding
168. (AATA)31236527263652737Coding
169. (GTGAA)31536581173658131Non coding
170. (GCTG)31236789523678963Coding
171. (TTC)41237507323750743Coding
172. (AAAT)31237661113766122Coding
173. (CTT)41237719843771995Coding
174. (TGC)61837774973777514Coding
175. (CAG)41237975833797594Coding
176. (ATCC)31238192763819287Coding
177. (GCT)41238209983821009Coding
178. (TTC)41238343133834324Coding
179. (GAT)41238886753888686Coding
180. (TTC)51539271953927209Coding
181. (AGA)41239474623947473Non coding
182. (ATGG)31239487343948745Coding
183. (ATT)41239550963955107Coding
184. (TGA)41239927913992802Non coding
185. (CAC)41240004284000439Coding
186. (TCTTC)31540282424028256Coding
187. (ATAA)31240298044029815Coding
188. (CTT)41240353484035359Coding
189. (TTA)41240604514060462Coding
190. (AAG)41240630274063038Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.