CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.48 kb   Average length of SSR  : 12.27 bp
Coding      : 2338     Non-Coding           : 420   Coding and Non-Coding : 57
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TTTCA1468256838Coding
2. GACAA143086430877Coding
3. TAAGA154740647420Non coding
4. TTAAC14104681104694Coding
5. GAATT14164875164888Coding
6. CTTTT15181563181577Coding
7. GGAAC19261868261886Coding
8. CCGAA16433697433712Coding
9. TTCCT15458836458850Non coding
10. TCCCA16465939465954Non coding
11. AGATC14505490505503Coding
12. CTTAT14510790510803Coding
13. TTTCT14523927523940Non coding
14. GTTAA15590516590530Non coding
15. TTGTC14594819594832Coding
16. CAGTT14652277652290Coding
17. GATTG16662233662248Coding
18. GGGAA16667424667439Coding
19. AGTAA15732231732245Non coding
20. ACCGC14818034818047Coding
21. CAAGT14883853883866Coding
22. GCCAA14888311888324Coding
23. GCGGT14910122910135Coding
24. CTTTT15926069926083Coding
25. TTATC1510162481016262Coding
26. TTTTC1410554991055512Non coding
27. GCATT1511232361123250Coding
28. TTTCT1411346071134620Non coding
29. ACCGC1411429711142984Coding
30. AGTTG1512473731247387Coding
31. TTTGA1512478841247898Non coding
32. TAGGA1412839491283962Coding
33. TCTTG1912839641283982Coding
34. ATAAA1513462651346279Coding
35. ATTTT1513487501348764Coding
36. AATAT1413704541370467Coding
37. CTTTA1515343951534409Coding
38. GGGGA1515819021581916Non coding
39. AGGGA1515981791598193Non coding
40. ACAAA1416467621646775Coding
41. ATGTG1416594511659464Coding
42. GGGAA1417233171723330Coding
43. TGGTG1917306631730681Coding
44. GATGG1617471081747123Coding
45. ATTTT1618194601819475Coding-Non coding
46. TAAAT1518222121822226Non coding
47. AGTGA1618272071827222Coding
48. ATTTC1518646461864660Non coding
49. ATTGG1418893981889411Coding
50. AAGTA1519227191922733Coding
51. TTAGA1419466321946645Non coding
52. CTTGT1419614971961510Coding
53. CTTCT1419731251973138Coding
54. AAGCG1519792491979263Coding
55. CCTTT1519803861980400Coding
56. CATTG1419968401996853Coding
57. TGCTT1420499042049917Coding
58. ATATG1521603062160320Non coding
59. AAAAT1522399082239922Coding
60. TTGTT1422925162292529Coding
61. CATAG1523137242313738Coding
62. TGAGT1523601832360197Coding
63. GCACT1423877962387809Coding
64. TAGGA1524030962403110Non coding
65. GGATG1924244762424494Coding
66. GTAAA1424534462453459Coding
67. AATCA1424536502453663Coding
68. TTAAA1524674052467419Non coding
69. TAGTC1525150682515082Non coding
70. AACCC1425506732550686Coding
71. TTAAA1525636002563614Coding-Non coding
72. TTGTG1426189192618932Coding
73. GCTTG1426262142626227Coding
74. TTACA1426707332670746Coding
75. AAGTT1526862352686249Non coding
76. TGATT1527548172754831Coding
77. AATTC1427602902760303Coding
78. CGTCC1427801552780168Coding
79. GAAAA1628090612809076Coding
80. CGATC1528161912816205Coding
81. TAACC1528408792840893Non coding
82. AACTC1428731072873120Coding
83. CTTTC1528912792891293Coding
84. TTCAA1429460552946068Coding
85. AAGAA1429503982950411Non coding
86. GTTCC1629528382952853Coding
87. AGGAA1530032563003270Coding
88. TAAAA1530246073024621Non coding
89. TTCAG1430300823030095Coding
90. TTTGC1630672803067295Coding
91. GACCC1530905873090601Coding
92. GCCAA1631138823113897Coding
93. AAAGG1431378463137859Coding
94. TCGGA1631506913150706Coding
95. TGATT1431767063176719Coding
96. TTGTT1431798063179819Coding
97. GTAAA1431969653196978Coding
98. ATTTA1532473773247391Coding
99. CTTTT1533735863373600Coding
100. GGGAA1534689673468981Coding
101. CCTTT1534693703469384Non coding
102. GAGAG1534864843486498Coding
103. TCATC1435803313580344Coding
104. TAAAT1436220163622029Coding
105. GTAAA1538290563829070Coding
106. CTAAA1438703043870317Coding
107. GGGAA1539445243944538Non coding
108. TATTG1939581113958129Coding
109. ATTGT1439804663980479Non coding
110. AATCA2039808693980888Coding
111. CCAAC1540168694016883Coding
112. AAAAT1540968504096864Coding
113. TAGAT1441235824123595Coding
114. GGACG1441334574133470Coding
115. TGTTG1541585204158534Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.