CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 21.88 kb   Average length of SSR  : 13.07 bp
Coding      : 172     Non-Coding           : 16   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GAA)4123358633597Coding
2. (AGC)515158942158956Coding
3. (TCA)412185620185631Coding
4. (GAT)412260356260367Coding
5. (GCT)412373507373518Coding
6. (AGC)412512439512450Coding
7. (GGA)412555256555267Coding
8. (AGA)412578363578374Coding
9. (CTG)412592828592839Coding
10. (GAT)515694604694618Coding
11. (AGA)618711493711510Coding
12. (GCT)412727913727924Coding
13. (ATT)412736904736915Coding
14. (CTG)412790106790117Coding
15. (CTG)412790142790153Coding
16. (CTG)412790178790189Coding
17. (CTG)412790214790225Coding
18. (CTG)412790250790261Coding
19. (CAG)412807505807516Coding
20. (AAC)412865805865816Coding
21. (TGC)412912867912878Coding
22. (TGC)412974904974915Coding
23. (AAG)412975083975094Coding
24. (TAA)41210135611013572Coding
25. (GTA)41210450991045110Non coding
26. (ATC)41211167301116741Coding
27. (CTT)41211503391150350Coding
28. (TCT)51511797271179741Coding
29. (TTC)41211929951193006Coding
30. (CAG)41212144811214492Coding
31. (AGT)41212539441253955Coding
32. (ATC)41212619631261974Non coding
33. (AAG)41213064481306459Coding
34. (GCT)41213332521333263Coding
35. (CCA)41213351941335205Coding
36. (GCA)41213354641335475Coding
37. (CAA)41213428251342836Coding
38. (GAT)51513826661382680Coding
39. (AGA)41214048311404842Coding
40. (CTG)41214820671482078Coding
41. (TGT)41214833391483350Coding
42. (GCA)41214890401489051Coding
43. (TCA)41215924441592455Non coding
44. (GCA)41216513371651348Coding
45. (CAC)41216694861669497Coding
46. (CTC)41217412341741245Coding
47. (GCA)41217707871770798Coding
48. (GCT)41217853841785395Coding
49. (AGA)41219661081966119Coding
50. (TCA)61819730431973060Coding
51. (GAA)41219793381979349Coding
52. (GAA)41219992581999269Coding
53. (TGC)41220348682034879Coding
54. (AGC)41220737952073806Coding
55. (GCA)41220988922098903Coding
56. (TTA)41221223322122343Coding
57. (GCA)41221257892125800Coding
58. (TTC)41221513322151343Coding
59. (TTC)41222322812232292Coding
60. (TGC)41222739732273984Coding
61. (TTC)41223507602350771Coding
62. (TGC)41223683292368340Coding
63. (AGA)41223879572387968Coding
64. (TGC)41224070362407047Coding
65. (ATG)41224353392435350Coding
66. (CAA)41224440682444079Coding
67. (AGC)41224887822488793Coding
68. (TGG)41225100972510108Coding
69. (CTT)41225516432551654Non coding
70. (AAG)72125781302578150Coding
71. (GAA)41225969702596981Coding
72. (GAA)41225970152597026Coding
73. (TGC)41226036982603709Coding
74. (AGC)41226065422606553Coding
75. (TCT)41226345632634574Coding
76. (GAG)41226621732662184Non coding
77. (GAA)41226801932680204Coding
78. (GCA)41228289662828977Coding
79. (TCG)41228531702853181Coding
80. (GCA)41228979562897967Non coding
81. (GCA)41229157592915770Coding
82. (TCT)41229327972932808Coding
83. (TGC)51529546192954633Coding
84. (AGC)41229639822963993Coding
85. (GCA)41229895532989564Coding
86. (TTC)41230297563029767Coding
87. (CTT)41231510023151013Coding
88. (TGC)41231680683168079Coding
89. (TCT)41232196643219675Coding
90. (TTG)41232515773251588Coding
91. (CAT)41232522733252284Coding
92. (AAT)41233084323308443Coding
93. (GAA)41233377233337734Coding
94. (CAT)41233590173359028Coding
95. (GCA)41233620253362036Coding
96. (CTT)51534112833411297Coding
97. (AAG)41234320903432101Coding
98. (ATT)41234374883437499Coding
99. (GAA)41234686373468648Coding
100. (CTG)41235079043507915Coding
101. (GCT)41235289473528958Coding
102. (AGA)41235635243563535Non coding
103. (CAA)41235807593580770Coding
104. (CTG)41235938203593831Coding
105. (GCA)51536505253650539Coding
106. (TTC)41237507323750743Coding
107. (CTT)41237719843771995Coding
108. (TGC)61837774973777514Coding
109. (CAG)41237975833797594Coding
110. (GCT)41238209983821009Coding
111. (TTC)41238343133834324Coding
112. (GAT)41238886753888686Coding
113. (TTC)51539271953927209Coding
114. (AGA)41239474623947473Non coding
115. (ATT)41239550963955107Coding
116. (TGA)41239927913992802Non coding
117. (CAC)41240004284000439Coding
118. (CTT)41240353484035359Coding
119. (TTA)41240604514060462Coding
120. (AAG)41240630274063038Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.