CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Halothece sp. PCC 7418 (NC_019779 4179171 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 21.88 kb   Average length of SSR  : 13.07 bp
Coding      : 172     Non-Coding           : 16   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 120 51 7 10 190
IMPERFECT 1 121 1505 984 115 89 2815
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AACA)312155884155895Non coding
2. (TTAT)312165218165229Coding
3. (TTTC)312214995215006Non coding
4. (ATTT)312266027266038Coding
5. (TTAT)312274782274793Coding
6. (TTTA)312283810283821Coding
7. (CCAG)312334967334978Coding
8. (ATTA)312354230354241Coding-Non coding
9. (GTTT)312359621359632Non coding
10. (AAAC)312436883436894Coding
11. (ATTA)312459301459312Coding
12. (ATTC)312646452646463Coding-Non coding
13. (TTTA)312759229759240Coding
14. (TCTT)312998425998436Coding
15. (TTTG)312998911998922Coding
16. (CAAT)31212104781210489Coding
17. (ATTA)31212126701212681Coding-Non coding
18. (TATT)31212761541276165Coding
19. (TTTA)31213135501313561Coding
20. (ATTA)31213320111332022Non coding
21. (GTTG)31214153411415352Coding
22. (CCTT)31215991541599165Coding
23. (AATT)31216053031605314Coding
24. (TTTA)31217165681716579Coding
25. (TATT)31217333451733356Coding
26. (AATA)31217679441767955Coding
27. (TTGC)31218993421899353Coding
28. (CAAA)31220144192014430Coding
29. (TTTA)31222657162265727Coding
30. (AAGC)31222840012284012Coding
31. (CAAC)31223967832396794Coding
32. (TAAA)31224351452435156Coding
33. (CAAA)31224497592449770Coding
34. (GGTT)31224557152455726Coding
35. (TGAC)31225082182508229Coding
36. (AACC)31225371102537121Coding
37. (GCAA)31225661652566176Coding
38. (AATG)31225873372587348Coding
39. (AATC)31227226732722684Coding
40. (ACAG)31229852322985243Non coding
41. (TTAT)31230048223004833Coding
42. (TTCC)31230123603012371Coding
43. (ATTT)31232682743268285Coding
44. (AATT)31233653133365324Coding
45. (GATT)31234814013481412Coding
46. (AATA)31236527263652737Coding
47. (GCTG)31236789523678963Coding
48. (AAAT)31237661113766122Coding
49. (ATCC)31238192763819287Coding
50. (ATGG)31239487343948745Coding
51. (ATAA)31240298044029815Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.