CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Leptolyngbya sp. PCC 7376 (NC_019683 5125951 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 22.68 kb   Average length of SSR  : 13.09 bp
Coding      : 186     Non-Coding           : 33   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 5 115 83 11 11 225
IMPERFECT 1 162 1526 1080 125 106 3000
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGGA)3123936739378Coding
2. (GTGGA)3158155981573Non coding
3. (AAAC)3129256992580Non coding
4. (GGT)412156229156240Coding
5. (TGAAT)315176207176221Coding
6. (GGT)412185937185948Coding
7. (ATC)618198626198643Coding
8. (ACC)412215621215632Coding
9. (CGCC)312219137219148Coding
10. (TCC)412219231219242Coding
11. (AAAT)312219805219816Coding
12. (AGCC)312262154262165Coding
13. (TGC)412269229269240Coding
14. (TGG)412330495330506Coding
15. (TCA)412376182376193Coding
16. (TTTTG)315380742380756Non coding
17. (AACAAG)318447679447696Coding
18. (GGT)412504037504048Coding
19. (TGG)412548409548420Coding
20. (GCAA)312575536575547Coding
21. (GTCT)312667102667113Coding-Non coding
22. (AATA)312672865672876Coding
23. (GTG)412676079676090Coding
24. (CTAA)312681619681630Non coding
25. (AAG)412712627712638Coding
26. (GAGT)312745228745239Coding
27. (GCCA)312773081773092Coding
28. (ACTG)312811900811911Coding
29. (TGC)412819321819332Coding
30. (GGT)412830559830570Coding
31. (AAT)412844351844362Coding
32. (TTG)412851714851725Coding
33. (AGA)515856826856840Coding
34. (CAAGC)315920707920721Coding
35. (TTCT)312940410940421Non coding
36. (ATT)412982931982942Coding
37. (TTGC)31210331741033185Coding
38. (CAA)41211668161166827Coding
39. (ATCC)31211787221178733Coding
40. (TTTC)31211999651199976Non coding
41. (GCC)41212089441208955Coding
42. (TCT)51512322071232221Coding
43. (AATC)31212948191294830Coding-Non coding
44. (ACC)41213158651315876Coding
45. (TGG)41213657971365808Coding
46. (TCA)41213700491370060Coding
47. (AG)61213771331377144Coding
48. (AAC)41213852821385293Coding
49. (AGA)61814484781448495Coding
50. (ATCAG)31514680831468097Coding
51. (CCA)41214723061472317Coding
52. (CCAACT)42414802891480312Coding
53. (CCAACA)53014803881480417Coding
54. (CAAC)31214946071494618Non coding
55. (TAAA)41614978391497854Coding
56. (AAAC)31215512131551224Coding
57. (TGAAT)31515646301564644Non coding
58. (AGAA)31215742601574271Non coding
59. (ACATCC)31815759801575997Coding
60. (AT)61215831531583164Non coding
61. (ATTTG)31515863821586396Non coding
62. (CAC)41216094261609437Coding
63. (GTTT)31216525531652564Coding
64. (TTGA)31216529601652971Coding
65. (CAC)41216642641664275Coding
66. (TCG)72117042461704266Coding
67. (TTAT)31217315101731521Non coding
68. (GTC)41218187011818712Coding
69. (TTTA)31218286871828698Coding
70. (CCTC)31218322451832256Non coding
71. (GAGG)31218322651832276Non coding
72. (CGC)41218499501849961Coding
73. (CAG)41219445901944601Coding
74. (GCAA)31219499231949934Coding
75. (TGG)41220679002067911Coding
76. (TTTC)31220858672085878Non coding
77. (TTTG)31221296832129694Coding
78. (ACCGAA)31821327162132733Coding
79. (TAGGCA)31821417782141795Coding
80. (AAGA)31221638942163905Non coding
81. (ACAA)31221659002165911Coding
82. (CTG)41221887862188797Coding
83. (ATTT)31221996982199709Coding
84. (GTG)41222118202211831Coding
85. (AAAG)31222174512217462Non coding
86. (ATTT)31223156792315690Coding
87. (ATTT)31223933132393324Coding
88. (ATT)41224000142400025Coding-Non coding
89. (CCAAAT)31824290712429088Coding
90. (GGATTT)31824376652437682Coding
91. (TGT)41224496952449706Coding
92. (TGT)41224500882450099Coding
93. (TGT)41224504812450492Coding
94. (TGT)41224508742450885Coding
95. (TGT)41224512672451278Coding
96. (TTGAT)31525013642501378Non coding
97. (TCATCG)31825070042507021Coding
98. (ATGA)31225112992511310Coding
99. (TTC)41225697742569785Coding
100. (GAC)82425820762582099Coding
101. (GCT)41226374442637455Coding
102. (GCA)41226394872639498Coding
103. (CAGT)31226521912652202Coding
104. (GTT)41226592172659228Coding
105. (CTAC)31226852272685238Non coding
106. (AATT)31226959232695934Non coding
107. (TCA)41226972672697278Non coding
108. (AGTG)31226990832699094Coding
109. (CCA)41227180542718065Coding
110. (ATCC)31228359772835988Coding
111. (TGG)41228410382841049Coding
112. (GAA)41228747022874713Coding
113. (CAAA)31228929132892924Non coding
114. (GTTGCT)31829110212911038Coding
115. (ATTT)31229184862918497Coding
116. (GGTCG)31529185832918597Coding
117. (TTGT)31229210162921027Coding
118. (GCT)41229911782991189Coding
119. (TGG)51530133173013331Coding
120. (CCA)41230486993048710Coding
121. (TTAT)31231696063169617Coding-Non coding
122. (ACC)41231734103173421Coding
123. (TTGA)31232286453228656Coding
124. (AGA)41233262833326294Coding
125. (GCTC)31233284733328484Coding
126. (AAAT)31233714603371471Coding
127. (TTTA)31233960763396087Coding
128. (TTTA)31233968853396896Coding
129. (GAA)41234297733429784Coding
130. (GA)71434768953476908Coding
131. (AGCC)31234984423498453Coding
132. (TAAA)31235059773505988Coding-Non coding
133. (CTG)41235274873527498Coding
134. (GTTG)31235427793542790Coding
135. (CTTT)31235434613543472Coding
136. (TGC)41235813973581408Coding
137. (TTAC)31236319313631942Coding
138. (TTGG)31236520503652061Coding
139. (TGG)41236537953653806Coding
140. (TTGG)31236556573655668Coding
141. (AACA)31236769853676996Coding
142. (AAATC)31536895153689529Non coding
143. (CATT)31237177013717712Coding
144. (TTGA)31238103803810391Non coding
145. (ACAA)31238164253816436Coding
146. (TGC)51538191433819157Coding
147. (ATC)41238222743822285Coding
148. (CAC)41238660543866065Coding
149. (GCG)41239183873918398Coding
150. (TCAGC)42039430183943037Non coding
151. (TGG)41239838433983854Coding
152. (AGC)41239879363987947Coding
153. (TTC)41240003014000312Coding
154. (GATT)31240030374003048Coding
155. (TGG)41240157694015780Coding
156. (CTT)51540235054023519Coding
157. (ATTT)31240304124030423Coding
158. (TATT)31240657024065713Coding
159. (TTCA)31240993404099351Coding
160. (TGC)41241078794107890Coding
161. (GCA)41241138664113877Coding
162. (AACA)31241549374154948Coding
163. (CTTT)31241829464182957Non coding
164. (ACA)41241881044188115Coding
165. (AGA)41241972794197290Coding
166. (CT)61241992014199212Coding
167. (TTC)41242210534221064Coding
168. (TAAG)31242377994237810Non coding
169. (ATC)51542452994245313Coding
170. (ATC)51542502554250269Coding
171. (GATTCA)31842826704282687Coding
172. (GAT)41243064394306450Coding
173. (CCG)41243148344314845Coding
174. (AAT)41243358274335838Non coding
175. (ATCA)31243495604349571Coding
176. (AGCC)31243553714355382Coding
177. (TA)61243621284362139Non coding
178. (CTT)41243730124373023Coding
179. (ACC)41244220324422043Coding
180. (TAAA)31244273434427354Coding-Non coding
181. (TCA)61844393294439346Coding
182. (TAAA)31244551994455210Coding
183. (ACG)41244657594465770Coding
184. (GATT)31244867524486763Coding
185. (TTGA)41645192234519238Non coding
186. (GGC)41245343984534409Coding
187. (TGG)51545347874534801Coding
188. (GGT)51545363694536383Coding
189. (GGC)41245373444537355Coding
190. (GGT)51545379294537943Coding
191. (GGC)41245381244538135Coding
192. (CGG)51545388464538860Coding
193. (GGC)41245394684539479Coding
194. (GGT)51545397894539803Coding
195. (GGC)41245410194541030Coding
196. (GGT)51545416224541636Coding
197. (GGT)41245418834541894Coding
198. (TGG)51545419874542001Coding
199. (GGT)51545425044542518Coding
200. (TGG)41245432084543219Coding
201. (TGG)51545434484543462Coding
202. (GGT)51545441694544183Coding
203. (TTTG)31245756854575696Coding
204. (GCA)51545902774590291Coding
205. (TTGT)31246971404697151Coding
206. (GGTT)31247525014752512Coding
207. (CTG)41247896704789681Non coding
208. (ATC)41247936314793642Coding
209. (CAAT)31247947284794739Coding-Non coding
210. (CAGT)31248163114816322Coding
211. (TGA)41248301394830150Coding
212. (CCG)41248319544831965Coding
213. (GCA)41248397644839775Coding
214. (GGT)41248632534863264Coding
215. (TGG)41248760564876067Coding
216. (TTTA)31248818444881855Non coding
217. (TTG)41249404084940419Coding
218. (TATT)31249477004947711Non coding
219. (CAG)41249702574970268Coding
220. (ACG)41249935994993610Coding
221. (CTT)41249936324993643Coding
222. (CAC)41249951154995126Coding
223. (GCT)41249988184998829Coding
224. (CCT)41250119345011945Coding
225. (CTAA)31250443925044403Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.