CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Leptolyngbya sp. PCC 7376 (NC_019683 5125951 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 22.68 kb   Average length of SSR  : 13.09 bp
Coding      : 186     Non-Coding           : 33   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 5 115 83 11 11 225
IMPERFECT 1 162 1526 1080 125 106 3000
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGT)412156229156240Coding
2. (GGT)412185937185948Coding
3. (ATC)618198626198643Coding
4. (ACC)412215621215632Coding
5. (TCC)412219231219242Coding
6. (TGC)412269229269240Coding
7. (TGG)412330495330506Coding
8. (TCA)412376182376193Coding
9. (GGT)412504037504048Coding
10. (TGG)412548409548420Coding
11. (GTG)412676079676090Coding
12. (AAG)412712627712638Coding
13. (TGC)412819321819332Coding
14. (GGT)412830559830570Coding
15. (AAT)412844351844362Coding
16. (TTG)412851714851725Coding
17. (AGA)515856826856840Coding
18. (ATT)412982931982942Coding
19. (CAA)41211668161166827Coding
20. (GCC)41212089441208955Coding
21. (TCT)51512322071232221Coding
22. (ACC)41213158651315876Coding
23. (TGG)41213657971365808Coding
24. (TCA)41213700491370060Coding
25. (AAC)41213852821385293Coding
26. (AGA)61814484781448495Coding
27. (CCA)41214723061472317Coding
28. (CAC)41216094261609437Coding
29. (CAC)41216642641664275Coding
30. (TCG)72117042461704266Coding
31. (GTC)41218187011818712Coding
32. (CGC)41218499501849961Coding
33. (CAG)41219445901944601Coding
34. (TGG)41220679002067911Coding
35. (CTG)41221887862188797Coding
36. (GTG)41222118202211831Coding
37. (ATT)41224000142400025Coding-Non coding
38. (TGT)41224496952449706Coding
39. (TGT)41224500882450099Coding
40. (TGT)41224504812450492Coding
41. (TGT)41224508742450885Coding
42. (TGT)41224512672451278Coding
43. (TTC)41225697742569785Coding
44. (GAC)82425820762582099Coding
45. (GCT)41226374442637455Coding
46. (GCA)41226394872639498Coding
47. (GTT)41226592172659228Coding
48. (TCA)41226972672697278Non coding
49. (CCA)41227180542718065Coding
50. (TGG)41228410382841049Coding
51. (GAA)41228747022874713Coding
52. (GCT)41229911782991189Coding
53. (TGG)51530133173013331Coding
54. (CCA)41230486993048710Coding
55. (ACC)41231734103173421Coding
56. (AGA)41233262833326294Coding
57. (GAA)41234297733429784Coding
58. (CTG)41235274873527498Coding
59. (TGC)41235813973581408Coding
60. (TGG)41236537953653806Coding
61. (TGC)51538191433819157Coding
62. (ATC)41238222743822285Coding
63. (CAC)41238660543866065Coding
64. (GCG)41239183873918398Coding
65. (TGG)41239838433983854Coding
66. (AGC)41239879363987947Coding
67. (TTC)41240003014000312Coding
68. (TGG)41240157694015780Coding
69. (CTT)51540235054023519Coding
70. (TGC)41241078794107890Coding
71. (GCA)41241138664113877Coding
72. (ACA)41241881044188115Coding
73. (AGA)41241972794197290Coding
74. (TTC)41242210534221064Coding
75. (ATC)51542452994245313Coding
76. (ATC)51542502554250269Coding
77. (GAT)41243064394306450Coding
78. (CCG)41243148344314845Coding
79. (AAT)41243358274335838Non coding
80. (CTT)41243730124373023Coding
81. (ACC)41244220324422043Coding
82. (TCA)61844393294439346Coding
83. (ACG)41244657594465770Coding
84. (GGC)41245343984534409Coding
85. (TGG)51545347874534801Coding
86. (GGT)51545363694536383Coding
87. (GGC)41245373444537355Coding
88. (GGT)51545379294537943Coding
89. (GGC)41245381244538135Coding
90. (CGG)51545388464538860Coding
91. (GGC)41245394684539479Coding
92. (GGT)51545397894539803Coding
93. (GGC)41245410194541030Coding
94. (GGT)51545416224541636Coding
95. (GGT)41245418834541894Coding
96. (TGG)51545419874542001Coding
97. (GGT)51545425044542518Coding
98. (TGG)41245432084543219Coding
99. (TGG)51545434484543462Coding
100. (GGT)51545441694544183Coding
101. (GCA)51545902774590291Coding
102. (CTG)41247896704789681Non coding
103. (ATC)41247936314793642Coding
104. (TGA)41248301394830150Coding
105. (CCG)41248319544831965Coding
106. (GCA)41248397644839775Coding
107. (GGT)41248632534863264Coding
108. (TGG)41248760564876067Coding
109. (TTG)41249404084940419Coding
110. (CAG)41249702574970268Coding
111. (ACG)41249935994993610Coding
112. (CTT)41249936324993643Coding
113. (CAC)41249951154995126Coding
114. (GCT)41249988184998829Coding
115. (CCT)41250119345011945Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.