CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Leptolyngbya sp. PCC 7376 (NC_019683 5125951 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 225     Density of SSR      : 1SSR/ 22.68 kb   Average length of SSR  : 13.09 bp
Coding      : 186     Non-Coding           : 33   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 5 115 83 11 11 225
IMPERFECT 1 162 1526 1080 125 106 3000
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGGA)3123936739378Coding
2. (AAAC)3129256992580Non coding
3. (CGCC)312219137219148Coding
4. (AAAT)312219805219816Coding
5. (AGCC)312262154262165Coding
6. (GCAA)312575536575547Coding
7. (GTCT)312667102667113Coding-Non coding
8. (AATA)312672865672876Coding
9. (CTAA)312681619681630Non coding
10. (GAGT)312745228745239Coding
11. (GCCA)312773081773092Coding
12. (ACTG)312811900811911Coding
13. (TTCT)312940410940421Non coding
14. (TTGC)31210331741033185Coding
15. (ATCC)31211787221178733Coding
16. (TTTC)31211999651199976Non coding
17. (AATC)31212948191294830Coding-Non coding
18. (CAAC)31214946071494618Non coding
19. (TAAA)41614978391497854Coding
20. (AAAC)31215512131551224Coding
21. (AGAA)31215742601574271Non coding
22. (GTTT)31216525531652564Coding
23. (TTGA)31216529601652971Coding
24. (TTAT)31217315101731521Non coding
25. (TTTA)31218286871828698Coding
26. (CCTC)31218322451832256Non coding
27. (GAGG)31218322651832276Non coding
28. (GCAA)31219499231949934Coding
29. (TTTC)31220858672085878Non coding
30. (TTTG)31221296832129694Coding
31. (AAGA)31221638942163905Non coding
32. (ACAA)31221659002165911Coding
33. (ATTT)31221996982199709Coding
34. (AAAG)31222174512217462Non coding
35. (ATTT)31223156792315690Coding
36. (ATTT)31223933132393324Coding
37. (ATGA)31225112992511310Coding
38. (CAGT)31226521912652202Coding
39. (CTAC)31226852272685238Non coding
40. (AATT)31226959232695934Non coding
41. (AGTG)31226990832699094Coding
42. (ATCC)31228359772835988Coding
43. (CAAA)31228929132892924Non coding
44. (ATTT)31229184862918497Coding
45. (TTGT)31229210162921027Coding
46. (TTAT)31231696063169617Coding-Non coding
47. (TTGA)31232286453228656Coding
48. (GCTC)31233284733328484Coding
49. (AAAT)31233714603371471Coding
50. (TTTA)31233960763396087Coding
51. (TTTA)31233968853396896Coding
52. (AGCC)31234984423498453Coding
53. (TAAA)31235059773505988Coding-Non coding
54. (GTTG)31235427793542790Coding
55. (CTTT)31235434613543472Coding
56. (TTAC)31236319313631942Coding
57. (TTGG)31236520503652061Coding
58. (TTGG)31236556573655668Coding
59. (AACA)31236769853676996Coding
60. (CATT)31237177013717712Coding
61. (TTGA)31238103803810391Non coding
62. (ACAA)31238164253816436Coding
63. (GATT)31240030374003048Coding
64. (ATTT)31240304124030423Coding
65. (TATT)31240657024065713Coding
66. (TTCA)31240993404099351Coding
67. (AACA)31241549374154948Coding
68. (CTTT)31241829464182957Non coding
69. (TAAG)31242377994237810Non coding
70. (ATCA)31243495604349571Coding
71. (AGCC)31243553714355382Coding
72. (TAAA)31244273434427354Coding-Non coding
73. (TAAA)31244551994455210Coding
74. (GATT)31244867524486763Coding
75. (TTGA)41645192234519238Non coding
76. (TTTG)31245756854575696Coding
77. (TTGT)31246971404697151Coding
78. (GGTT)31247525014752512Coding
79. (CAAT)31247947284794739Coding-Non coding
80. (CAGT)31248163114816322Coding
81. (TTTA)31248818444881855Non coding
82. (TATT)31249477004947711Non coding
83. (CTAA)31250443925044403Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.